OR2L9P Olfactory Receptor
| Gene Symbol | OR2L9P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | L |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR1.5.20P, ORL3072 |
| External Ids | HGNC: 15015 GeneBank: AF399486, NG_004273 ORDB: ORL3072 |
| Build #39 labels | OR2L9P |
| Chromosomal location | 1:247,974,742-247,975,675 (+) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2L3 | 76.28% | 312 |
| OR2L5 | 76.6% | 312 |
| OR2L8 | 75.96% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2L5C | 71% | 312 |
| Mouse | Or2l5 | 69% | 307 |
| Rat | Or2l5b | 68% | 307 |
| Cow | OR2L3 | 73% | 312 |
| Orang | OR2L5 | 77% | 312 |
| Horse | OR2L5JP | 74% | 312 |
| Chimp | OR2L3 | 77% | 312 |
Sequence information
| Nucleotide sequence |
ATGGAAAAATACAATCAAACATCAACTGATTTCATCTTATTGGGGATCTTCCCACCATCC AGAATTGGCTTTCTCCTCTTCATTCTCCTTGTTCTCATTTTGCTATTGGCTTTAATTGGC AATCAGTCCGTGATCCTTCTCATCTTCTTGGACACTCATCTCCACACGCCCATTTATTTC TTACTTAGTCGGCTCTACCTCATTGACCTAAATTACATCTCCACTATTGTCCCCAGATGT TTTCTGATTTTCTGTTTGGAAACAAGTCTATTTCCTTCATTGGGTGTGGAATTCAGAGTT TCTTCTTTGTGACTTTAGCAGGTGCAGAAATGCTGCCACTGACATCAATGGCCTGTGATC ATTATGTAGCTGTTTGCTTTCCTCTCCACTATCCCATCCATATGAGCAAGATAGTATGTG CTGATGATAATAGGATCTTGGATAATGGGCTCTATCGACACTTGTGCTCACATTTCATAT ATGCCCCATATCCCTGTTGCTCAGCCAGGGCTGTGATGTCCCAGCCATGGTGACTCTGGC CTTCGTGGACACCTGGGTCTATGAGTGCACAGTGTTTTTGAGCACAACCCTCTTTCTCAT GTTTACCTTTATTGGTATTGCATGTTCCTATGGTGAGGTTCTCCTTACTGTCTACCACAT TAAATCTGCAGAAGGGAGGAAGAAGGCCTATTCGACCTGTAGCACCCACCTCACTGTAGT AATTTTCTACTATGCAATGTTTGCTTATACCTATCTATATCCAAGATACCTGCAATCTCC AACAGAGGACAAGGTTCTGGCTGTGTTCTACACCATCCTCACCTCAATGCTCAACCCCAT CATCTACAGCCTGAGAAACAGGGAGGTGATGGGGGCCCTGACACGAGTGAGTCAGAGAAT CTTCCCTGTGAAGATGAAGACAAACTTTCTGCCT |
| Conceptual translation |
MEKYNQTSTDFILLGIFPPSRIGFLLFILLVLILLLALIGNQSVILLIFLDTHLHTPIYF LLSRLYLIDLNYISTIVP/MFSDFLFGNKSISFIGCGIQSFFFVTLAGAEMLPLTSMAC DHYVAVCFPLHYPIHMSKIVC//MIIGSWIMGSIDTCAHISY\PISLLLSQGCDVPA MVTLAFVDTWVYECTVFLSTTLFLMFTFIGIACSYGEVLLTVYHIKSAEGRKKAYSTCST HLTVVIFYYAMFAYTYLYPRYLQSPTEDKVLAVFYTILTSMLNPIIYSLRNREVMGALTR VSQRIFPVKMKTNFLP Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) | |
| 1 | 247,974,915 | 247,974,915 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 1 | 247,975,218 | 247,975,218 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 1 | 247,975,229 | 247,975,229 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 1 | 247,975,275 | 247,975,275 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 1 | 247,975,286 | 247,975,286 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 1 | 247,975,340 | 247,975,340 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 1 | 247,975,391 | 247,975,391 | SNP | G/A | 1000GP (CEU) | |
| 1 | 247,975,546 | 247,975,546 | SNP | G/C | 1000GP (CEU) | |
| 1 | 248,138,173 | 248,138,173 | SNP | A/G | rs73139475 (DbSNP) | |
| 1 | 248,138,217 | 248,138,217 | SNP | G/T | rs4451578 (DbSNP) | |
| 1 | 248,138,520 | 248,138,520 | SNP | A/G | rs4268383 (DbSNP) | |
| 1 | 248,138,531 | 248,138,531 | SNP | A/G | rs4268384 (DbSNP) | |
| 1 | 248,138,577 | 248,138,577 | SNP | A/C | rs6689666 (DbSNP) | |
| 1 | 248,138,588 | 248,138,588 | SNP | A/G | rs6680172 (DbSNP) | |
| 1 | 248,138,642 | 248,138,642 | SNP | A/G | rs6694546 (DbSNP) | |
| 1 | 248,138,848 | 248,138,848 | SNP | C/G | rs12042554 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 247,074,430 | 248,328,835 | CopyNumber | Variation_6816 (DGV) |
| 1 | 247,714,585 | 248,277,146 | CopyNumber | Variation_3339 (DGV) |
| 1 | 247,753,207 | 248,376,070 | CopyNumber | Variation_8353 (DGV) |
| 1 | 247,753,334 | 248,322,316 | CopyNumber | Variation_2358 (DGV) |
| 1 | 247,849,473 | 248,277,638 | CopyNumber | Variation_48302 (DGV) |
| 1 | 247,849,473 | 248,285,441 | CopyNumber | Variation_48303 (DGV) |
| 1 | 248,060,959 | 249,167,690 | CopyNumber | Variation_8354 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.