OR2M1P Olfactory Receptor
| Gene Symbol | OR2M1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | M |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OST037, JCG10, HsOR1.5.28P |
| External Ids | HGNC: 8267 GeneBank: AF308814, AF399615, NR_002141 |
| Build #39 labels | OR2M1 |
| Chromosomal location | 1:248,121,932-248,122,861 (+) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2M2 | 89.68% | 310 |
| OR2M5 | 90.61% | 309 |
| OR2M7 | 90% | 310 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2M10P | 77% | 308 |
| Mouse | Or2m12 | 70% | 308 |
| Rat | Or2m12 | 71% | 307 |
| Cow | OR2M10 | 74% | 310 |
| Orang | OR2M3P | 90% | 307 |
| Orang | OR2M5P | 89% | 309 |
| Horse | OR2M24 | 76% | 309 |
| Chimp | OR2M7 | 91% | 310 |
| Chimp | OR2M2 | 90% | 310 |
| Chimp | OR2M5 | 89% | 308 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | AF308814 |
Sequence information
| Nucleotide sequence |
ATGGCATGGGAGAATCAGACCTTCAACTCCGGCTTCATCCTCCTGGGAATCTTCAATCAC AGCCCCACCCGCACCTTCCTCTTCTTTCTGGTCCTGTGCATCTTTTAGGTGGCCTTCATG GGAAACTCCCTCATGGTTCTCCTAATCTACCTGGATACCCAGCTCCATACCCCCATGTAC TTCCTCCTCAGTCAACTGTCCCCCATGGACGTCAGGCTCATCTGCACCACCGTACCCAAG ATGGCCTTCAACTACTTGTCTGGCAGCAAGTCCATTTCTATGGCTGGCTGTGCCACACAA ATTTTCTTCTGTGTATCACTGCTTGGCTCTGAATGCTTTCTGTTGGCTGTTATGTCTTAT GACTGCTACATTGCCATTTGCCACCCTCTAAGATACACCAATCTCATGAGACCCAAAATT TGTAGACTTATGACTGCCTTCTCCTGGATCCTGGGCTCTACAGATGGAATCATTTATGCT GTAGCCACATTTTCCTTCTCCTACTGTGGGTCTCGGGAAATAGCCCACTTCTTCTGTGAG TTACCTTCCCTACTAATCCTCTCATGCAATGACACATCAATATTTGAAAAGGTTATTTTC ATTTGCTCTATAGTAATGCTTGTTTTCCCTGTTGCAATCATCATTGCTTCCTATGCTGGA GTTATTCTGGCTGTCATTCACATGGGATCTGGAGAGGGTCGTCGCAAAGCTTTCACGACC TGTTCCTCTCACCTCATGGTGGTGGGAATGTTCTATGGAGCAGGTTTGTTCATGTACATA CAGCCCACATCTGATCGCTCCCCAACGCAGGACAAGCTGGTGTCTGTATTCTACACCATC CTCACTCCCATGCTGAATCCCCTCATCTACAGCCTCCGCAACAAGGAAGTGACCAGAGCA TTCATGAAGATCTCAGGAAAGGGCAAGTCT |
| Conceptual translation |
MAWENQTFNSGFILLGIFNHSPTRTFLFFLVLCIFXAFMGNSLMVLLIYLDTQLHTPMY FLLSQLSPMDVRLICTTVPKMAFNYLSGSKSISMAGCATQIFFCVSLLGSECFLLAVMSY DCYIAICHPLRYTNLMRPKICRLMTAFSWILGSTDGIIYAVATFSFSYCGSREIAHFFCE LPSLLILSCNDTSIFEKVIFICSIVMLVFPVAIIIASYAGVILAVIHMGSGEGRRKAFTT CSSHLMVVGMFYGAGLFMYIQPTSDRSPTQDKLVSVFYTILTPMLNPLIYSLRNKEVTRA FMKISGKGKS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 248,285,413 | 248,285,413 | SNP | A/C | rs41308200 (DbSNP) | |
| 1 | 248,285,906 | 248,285,906 | SNP | A/G | rs41295946 (DbSNP) | |
| 1 | 248,285,487 | 248,285,487 | SNP | A/G | rs6587423 (DbSNP) | |
| 1 | 248,285,436 | 248,285,436 | SNP | C/T | rs74153080 (DbSNP) | |
| 1 | 248,286,039 | 248,286,039 | SNP | C/T | rs73141235 (DbSNP) | |
| 1 | 248,285,311 | 248,285,311 | SNP | C/T | rs41308202 (DbSNP) | |
| 1 | 248,286,088 | 248,286,088 | SNP | G/A | rs72478206 (DbSNP) | |
| 1 | 248,285,441 | 248,285,441 | SNP | G/T | rs6587422 (DbSNP) | |
| 1 | 248,122,009 | 248,122,009 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 1 | 248,122,139 | 248,122,139 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 1 | 248,122,534 | 248,122,534 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 1 | 100 | -100 | SNP | G/T | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 247,753,334 | 248,322,316 | CopyNumber | Variation_2358 (DGV) |
| 1 | 247,074,430 | 248,328,835 | CopyNumber | Variation_6816 (DGV) |
| 1 | 247,753,207 | 248,376,070 | CopyNumber | Variation_8353 (DGV) |
| 1 | 248,060,959 | 249,167,690 | CopyNumber | Variation_8354 (DGV) |
| 1 | 248,242,528 | 248,817,382 | CopyNumber | Variation_8935 (DGV) |
| 1 | 247,849,473 | 248,285,441 | CopyNumber | Variation_48303 (DGV) |
| 1 | 248,179,503 | 248,290,781 | CopyNumber | Variation_74987 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR2M1P.aApr07-unspliced | main_exon | CDS_partial | chr1 | 248,122,283 | 248,122,800 | + |