OR2N1P Olfactory Receptor
| Gene Symbol | OR2N1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | N |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR6-18, dJ80I19.3, OR6-7, hs6M1-2, OR6-17, HsOR6.3.7P, ORL3166 |
| External Ids | HGNC: 8271 GeneBank: AF399498, BK004435, BK004664, HSA302624-HSA302633, NG_002216 ORDB: ORL3166 |
| Build #39 labels | OR2N1P |
| Chromosomal location | 6:29,137,883-29,138,816 (-) |
| Cluster | 6@29 |
| Synteny | CLIC#12 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2B11 | 57.48% | 301 |
| OR2B2 | 55.41% | 305 |
| OR2B6 | 57.37% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2B2 | 59% | 312 |
| Mouse | Or2n1 | 83% | 312 |
| Mouse | Or2n1d | 82% | 312 |
| Mouse | Or2n1b | 82% | 309 |
| Rat | Or2n1h | 82% | 312 |
| Rat | Or2n1 | 82% | 312 |
| Rat | Or2n1g | 82% | 308 |
| Rat | Or2n1j | 81% | 312 |
| Cow | OR2N1 | 85% | 312 |
| Cow | OR2N1O | 85% | 312 |
| Orang | OR2N1 | 94% | 312 |
| Horse | OR2N1Q | 86% | 312 |
| Horse | OR2N1 | 86% | 312 |
| Horse | OR2N1R | 85% | 312 |
| Chimp | OR2N1 | 97% | 312 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | 221382_at |
Sequence information
| Nucleotide sequence |
ATGCCACTAACTAATGAAAGCCACCCTGAAGAATTTATTCTGCTAGGCTTTGCAGACCGC CCTTGGCTAGAGCTTCCTCTGTTCACTAGTCTTCTTATAATGTACCCTATAGCCGTGATG GGAAACATCACAATCATTCTCATGTCCAGGTTAGACTCTCGTCTTCATAGCCCCATGTAT TTCTTCCTCACCAACCTCTCCTTTTTGGACATGTGTTATACCACAAGCATTGTCCCTCAG ATGCTGTTTAACCTGGGAAGCTCTAAGAAGACCATCAGCTATATGGGGTGTGCGGTTCAG CTTTATTTCTTTCACATAATGGGGGGAACAGAATGTTTGCTTTTGGCTATTATGTCCTTT GATCGCTATGTGGCCATCTGCAGACCTCTTCACTACACCCTCATCATGAATCAGCGCGTC TGTATCCTTAGTTTCCACCGTGTGGCTAATTGGAATAATCTATGCTGTCTCAGAGGCCAC TGCCACATTACAATTGCCACTGTGTGGTCTCAATAAACTGGACCACTTGGTGTGTGAGAT TCCTGTTCTGATAAAGATTGCCTGTGGTGAAAAGGGTTCTAACGAGCTCACACTCTCTGT GGTATGCATTTTTATGTTAGCTGTCCCACTATGCTTAATTCTTGCTTCCTATGCTAGTAT TGGAAGTGCTGTATTTAAGATCAAATCTTCCAAGGGAAGGAAAAAGGCCTTTGGGACATG CTCCTCCCATCTTATTGTAGTTTTCTTATTTTATGGCCCAGCCATCAGCATGTACCTTCA GCCCCCCTCCTCCATCTCAAGGGATCAACCCAAGTTCATGGCCCTCTTCTATGGAGTGGT GACTCCCTCACTCAACCCTTTTATCTACACCCTGCGGAATAAGAATGTAAAGGGGGCATT ACGCAACTTGGTGAGGAGCATTTTCAGCTTTAAG |
| Conceptual translation |
MPLTNESHPEEFILLGFADRPWLELPLFTSLLIMYPIAVMGNITIILMSRLDSRLHSPMY FFLTNLSFLDMCYTTSIVPQMLFNLGSSKKTISYMGCAVQLYFFHIMGGTECLLLAIMSF DRYVAICRPLHYTLIMNQRVCI/XPP/WLIGIIYAVSEATATLQLPLCGLNKLDHLV CEIPVLIKIACGEKGSNELTLSVVCIFMLAVPLCLILASYASIGSAVFKIKSSKGRKKAF GTCSSHLIVVFLFYGPAISMYLQPPSSISRDQPKFMALFYGVVTPSLNPFIYTLRNKNVK GALRNLVRSIFSFK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 29,106,468 | 29,106,468 | SNP | A/G | rs2267632 (DbSNP) | |
| 6 | 29,105,796 | 29,105,796 | SNP | C/G | rs7775256 (DbSNP) | |
| 6 | 29,106,348 | 29,106,348 | SNP | C/T | rs11760154 (DbSNP) | |
| 6 | 29,105,940 | 29,105,940 | SNP | G/T | rs58523512 (DbSNP) | |
| 6 | 29,106,226 | 29,106,226 | SNP | G/T | rs9257512 (DbSNP) | |
| 6 | 29,138,168 | 29,138,168 | SNP | G/A | 1000GP (CEU) | |
| 6 | 29,138,422 | 29,138,422 | SNP | T/C | 1000GP (CEU) | |
| 6 | 29,138,691 | 29,138,691 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 6 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 6 | 29,099,579 | 29,149,561 | CopyNumber | Variation_51868 (DGV) |
| 6 | 29,091,539 | 29,163,849 | CopyNumber | Variation_64459 (DGV) |
| 6 | 29,103,660 | 29,106,693 | Deletion | #267 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.