OR2T29 Olfactory Receptor
| Gene Symbol | OR2T291 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | T |
| Pseudogene | No |
| CORP pseudogene probability score | 0.03 (functional) |
| Aliases | HsOR1.5.44 |
| External Ids | HGNC: 31253 GeneBank: AB065613, NM_001004694 |
| Build #39 labels | |
| Chromosomal location | 1:248,558,547-248,559,473 (-) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2T5 | 99.35% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2T4D | 85% | 308 |
| Dog | OR2T4 | 85% | 305 |
| Dog | OR2T4C | 85% | 305 |
| Dog | OR2T4B | 83% | 305 |
| Mouse | Or2t29 | 82% | 303 |
| Rat | Or2t29 | 81% | 303 |
| Cow | OR2T4 | 83% | 308 |
| Cow | OR2T55 | 82% | 305 |
| Cow | OR2T29C | 82% | 306 |
| Orang | OR2T4 | 92% | 305 |
| Orang | OR2T4F | 90% | 305 |
| Horse | OR2T4 | 84% | 307 |
| Horse | OR2T79 | 82% | 304 |
| Horse | OR2T80 | 81% | 304 |
| Chimp | OR2T4E | 89% | 315 |
| Chimp | OR2T4 | 91% | 305 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC140915 |
Sequence information
| Nucleotide sequence |
ATGGCCAACCACACTGGAAGGTTGGATTTCATCCTCATGGGACTCTTCAGACAATCCAAA CATCCAGCTCTACTTAGTGTGGTCATCTTTGTGGTTTTCCTGAAGGCGTTGTCTGGAAAT GCTGTCCTGATCCTTCTGATACACTGTGACGCCCACCTCCACAGCCCCATGTACTTTTTC ATCAGTCAATTGTCTCTCATGGACATGGCGTACATTTCTGTCACTGTGCCCAAGATGCTC CTGGACCAGGTCATGGGTGTGAATAAGGTCTCAGCCCCTGAGTGTGGGATGCAGATGTTC CTCTATCTGACACTAGCAGGTTCGGAATTTTTCCTTCTAGCCACCATGGCCTATGACCGC TACGTGGCCATCTGCCATCCTCTCCGTTACCCTGTCCTCATGAACCATAGGGTCTGTCTT TTCCTGGCATCGGGCTGCTGGTTCCTGGGCTCAGTGGATGGCTTCATGCTCACTCCCATC ACCATGAGCTTCCCCTTCTGCAGATCCTGGGAGATTCATCATTTCTTCTGTGAAGTCCCT GCTGTAACGATCCTGTCCTGCTCAGACACCTCACTCTATGAGACCCTCATGTACCTATGC TGTGTCCTCATGCTCCTCATCCCTGTGACGATCATTTCAAGCTCCTATTTACTCATCCTC CTCACCGTCCACAGGATGAACTCAGCAGAGGGCCGGAAAAAGGCCTTTGCCACCTGCTCC TCCCACCTGACTGTGGTCATCCTCTTCTATGGGGCTGCCGTCTACACCTACATGCTCCCC AGCTCCTACCACACCCCTGAGAAGGACATGATGGTATCTGTCTTCTATACCATCCTCACT CCGGTGCTGAACCCTTTAATCTATAGTCTTAGGAATAAGGATGTCATGGGGGCTCTGAAG AAAATGTTAACTGTGAGATTCGTCCTT |
| Conceptual translation |
MANHTGRLDFILMGLFRQSKHPALLSVVIFVVFLKALSGNAVLILLIHCDAHLHSPMYFF ISQLSLMDMAYISVTVPKMLLDQVMGVNKVSAPECGMQMFLYLTLAGSEFFLLATMAYDR YVAICHPLRYPVLMNHRVCLFLASGCWFLGSVDGFMLTPITMSFPFCRSWEIHHFFCEVP AVTILSCSDTSLYETLMYLCCVLMLLIPVTIISSSYLLILLTVHRMNSAEGRKKAFATCS SHLTVVILFYGAAVYTYMLPSSYHTPEKDMMVSVFYTILTPVLNPLIYSLRNKDVMGALK KMLTVRFVL Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 248,687,510 | 248,865,377 | CopyNumber | Variation_0017 (DGV) |
| 1 | 248,644,944 | 248,790,408 | CopyNumber | Variation_0263 (DGV) |
| 1 | 248,701,948 | 248,877,423 | CopyNumber | Variation_2056 (DGV) |
| 1 | 248,595,681 | 248,817,382 | CopyNumber | Variation_2359 (DGV) |
| 1 | 248,500,109 | 248,865,374 | CopyNumber | Variation_3340 (DGV) |
| 1 | 248,060,959 | 249,167,690 | CopyNumber | Variation_8354 (DGV) |
| 1 | 248,522,680 | 249,158,239 | CopyNumber | Variation_8355 (DGV) |
| 1 | 248,242,528 | 248,817,382 | CopyNumber | Variation_8935 (DGV) |
| 1 | 248,626,918 | 248,830,541 | Inversion | Variation_37092 (DGV) |
| 1 | 248,646,428 | 248,728,407 | Inversion | Variation_59670 (DGV) |
| 1 | 248,703,193 | 248,795,305 | CopyNumber | Variation_75000 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| Q24R | % Freq | CORP | |
|---|---|---|---|
| 1 | Q | 92.17 | 0.098 |
| 2 | R | 7.83 | 0.098 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR2T29.aApr07-unspliced | main_exon | 3UTR | chr1 | 248,558,544 | 248,558,547 | - |
| CDS | chr1 | 248,558,547 | 248,559,473 | - | ||