OR2T32P Olfactory Receptor
| Gene Symbol | OR2T32P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | T |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR1.5.26P |
| External Ids | HGNC: 31254 GeneBank: NG_004411 |
| Build #39 labels | |
| Chromosomal location | 1:248,083,636-248,084,596 (-) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2T12 | 96.25% | 320 |
| OR2T33 | 96.56% | 320 |
| OR2T8 | 91.99% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2T22 | 78% | 312 |
| Mouse | Or2t44 | 74% | 316 |
| Rat | Or2t44b | 72% | 314 |
| Cow | OR2T22 | 76% | 309 |
| Orang | OR2T32 | 96% | 320 |
| Orang | OR2T32C | 93% | 320 |
| Horse | OR2T69 | 80% | 314 |
| Chimp | OR2T32 | 97% | 320 |
| Chimp | OR2T32B | 96% | 320 |
Sequence information
| Nucleotide sequence |
ATGGAGATGAGAAATACTACCCCAGACTTTATTCTCCTGGGACTCTTTAACCACACCAGA GCCCACCAAGTCCTCTTCATGATGGTTCTGAGTATCGTTTTGACCTCCCTGTTTGGCAAT TCCCTCATGATTCTCCTGATTCACCGGGACCGGCCGGCTCCACACGCCCATGTACTTCCT CCTGAGCCAACTCTCCCTCATGGACGTGATGCTGGTTTCCACCACTGTGCCCAAAATGGC GGCTGACTACTTGACCGGAAATAAGGCCATCTCCCGCGCTGGCTGTGGTGTGCAGATCTT CTTCCTCCCCACACTGGGTGGTGGAGAGTGCTTCCTCTTAGCAGCCATGGCCTATGACCG CTATGCGGCTGTCTGCCACCCACTCCGATATCCCACTCTCATGAGCTGGCAGCTGTGCCT GAGGATGACCATGTCGTCCTGGCTCCTGGGTGCAGCTGACGGGCTCCTGCAGGCTGTTGC TACCCTGAGCTTCCCATATTGCGGTGCACACGAGATCGATCACTTCTTCTGCGAGGCCCC CGTGCTGGTGCGTTTGGCTTGTGCTGACACTTCAGTCTTCGAAAACGCCATGTACATCTG CTGTGTGTTAATGCTCCTGGTCCCCTTTTCCCTCATCCTGTCCTCCTATGGTCTCATCCT CGCTGCTGTTCTGCACATGCGCTCTACAGAAGCCCGCAAGAAGGCCTTCGCCACCTGCTC TTCACATGTGGCTGTGGTGGGACTCTTTTATGGAGCTGCCATTTTTACCTATATGAGACC CAAATCCCACAGGTCCACTAACCACGACAAGGTTGTGTCAGCCTTCTATAGTATGTTCAC CCCTTTACTAAACCCCCTCATCTACAGTGTGAGGAACAGTGAGGTCAAGGAAGCCCTGAA ACGGTGGCTGGGGACATGTGTAAACCTGAAACACCAGCAAAATGAGGCCCACAGGTCAAG A |
| Conceptual translation |
MEMRNTTPDFILLGLFNHTRAHQVLFMMVLSIVLTSLFGNSLMILLIHRD\RLHTPMYF LLSQLSLMDVMLVSTTVPKMAADYLTGNKAISRAGCGVQIFFLPTLGGGECFLLAAMAYD RYAAVCHPLRYPTLMSWQLCLRMTMSSWLLGAADGLLQAVATLSFPYCGAHEIDHFFCEA PVLVRLACADTSVFENAMYICCVLMLLVPFSLILSSYGLILAAVLHMRSTEARKKAFATC SSHVAVVGLFYGAAIFTYMRPKSHRSTNHDKVVSAFYSMFTPLLNPLIYSVRNSEVKEAL KRWLGTCVNLKHQQNEAHRSR Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 248,247,747 | 248,247,747 | Del(1) | -/C | rs58195890 (DbSNP) | |
| 1 | 248,247,374 | 248,247,376 | Del(3) | -/AAG | rs71986063 (DbSNP) | |
| 1 | 248,247,746 | 248,247,746 | rescued_nonsense | -/C | rs67319155 (DbSNP) | |
| 1 | 248,247,237 | 248,247,237 | SNP | A/C | rs61856417 (DbSNP) | |
| 1 | 248,247,308 | 248,247,308 | SNP | A/C | rs61856418 (DbSNP) | |
| 1 | 248,247,748 | 248,247,748 | SNP | A/G | rs59550975 (DbSNP) | |
| 1 | 248,247,190 | 248,247,190 | SNP | A/G | rs71642433 (DbSNP) | |
| 1 | 248,247,754 | 248,247,754 | SNP | A/G | rs57985790 (DbSNP) | |
| 1 | 248,247,590 | 248,247,590 | SNP | A/G | rs55839802 (DbSNP) | |
| 1 | 248,247,010 | 248,247,010 | SNP | C/G | rs56024759 (DbSNP) | |
| 1 | 248,247,592 | 248,247,592 | SNP | C/G | rs28460545 (DbSNP) | |
| 1 | 248,247,860 | 248,247,860 | SNP | C/T | rs74153054 (DbSNP) | |
| 1 | 248,247,713 | 248,247,713 | SNP | C/T | rs12034735 (DbSNP) | |
| 1 | 248,247,586 | 248,247,586 | SNP | G/T | rs10788754 (DbSNP) | |
| 1 | 248,084,404 | 248,084,404 | SNP | G/A | 1000GP (CEU) | |
| 1 | 248,084,411 | 248,084,411 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 1 | 248,084,446 | 248,084,446 | SNP | G/A | 1000GP (CEU) | |
| 1 | 248,084,452 | 248,084,452 | SNP | G/A | 1000GP (CHBJPT) | |
| 1 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 247,753,334 | 248,322,316 | CopyNumber | Variation_2358 (DGV) |
| 1 | 247,714,585 | 248,277,146 | CopyNumber | Variation_3339 (DGV) |
| 1 | 247,074,430 | 248,328,835 | CopyNumber | Variation_6816 (DGV) |
| 1 | 247,753,207 | 248,376,070 | CopyNumber | Variation_8353 (DGV) |
| 1 | 248,060,959 | 249,167,690 | CopyNumber | Variation_8354 (DGV) |
| 1 | 248,242,528 | 248,817,382 | CopyNumber | Variation_8935 (DGV) |
| 1 | 247,849,473 | 248,277,638 | CopyNumber | Variation_48302 (DGV) |
| 1 | 247,849,473 | 248,285,441 | CopyNumber | Variation_48303 (DGV) |
| 1 | 248,145,644 | 248,277,638 | CopyNumber | Variation_48304 (DGV) |
| 1 | 248,179,503 | 248,290,781 | CopyNumber | Variation_74987 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.