OR2T5 Olfactory Receptor
| Gene Symbol | OR2T51 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | T |
| Pseudogene | No |
| CORP pseudogene probability score | |
| Aliases | OR1-62, HsOR1.5.43, ORL3013 |
| External Ids | HGNC: 15017 GeneBank: BK004465, NM_001004697 ORDB: ORL3013 |
| Build #39 labels | OR2T5 |
| Chromosomal location | 1:248,488,607-248,489,533 (+) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2T29 | 99.35% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2T4D | 84% | 308 |
| Dog | OR2T4C | 85% | 305 |
| Dog | OR2T4 | 85% | 305 |
| Dog | OR2T4B | 83% | 305 |
| Mouse | Or2t29 | 81% | 303 |
| Rat | Or2t29 | 81% | 303 |
| Cow | OR2T29 | 85% | 304 |
| Cow | OR2T4 | 82% | 308 |
| Cow | OR2T55 | 82% | 305 |
| Orang | OR2T4 | 91% | 305 |
| Orang | OR2T4F | 89% | 305 |
| Horse | OR2T4 | 84% | 307 |
| Horse | OR2T79 | 82% | 304 |
| Horse | OR2T80 | 81% | 304 |
| Chimp | OR2T29 | 95% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC140747 |
Sequence information
| Nucleotide sequence |
ATGGCCAACCACACTGGAAAGTTGGATTTCATCCTCATGGGACTCTTCAGACGATCCAAA CATCCAGCTCTACTTAGTGTGGTCATCTTTGTGGTTTTCCTGAAGGCGTTGTCTGGAAAT GCTGTCCTGATCCTTCTGATACACTGTGACGCCCACCTCCACAGCCCCATGTACTTTTTC ATCAGTCAATTGTCTCTCATGGACATGGCGTACATTTCTGTCACTGTGCCCAAGATGCTC CTGGACCAGGTCATGGGTGTGAATAAGGTCTCAGCCCCTGAGTGTGGGATGCAGATGTTC CTCTATCTGACACTAGCAGGTTCGGAATTTTTCCTTCTAGCCACCATGGCCTATGACCGC TACGTGGCCATCTGCCATCCTCTCCGTTACCCTGTCCTCATGAACCATAGGGTCTGTCTT TTCCTGGCATCGGGCTGCTGGTTCCTGGGCTCAGTGGATGGCTTCATGCTCACTCCCATC ACCATGAGCTTCCCCTTCTGCAGATCCTGGGAGATTCATCATTTCTTCTGTGAAGTCCCT GCTGTAACGATCCTGTCCTGCTCAGACACCTCACTCTATGAGACCCTCATGTACCTATGC TGTGTCCTCATGCTCCTCATCCCTGTGACGATCATTTCAAGCTCCTATTTACTCATCCTC CTCACCGTCCACAGGATGAACTCAGCAGAGGGCCGGAAAAAGGCCTTTGCCACCTGCTCC TCCCACCTGACTGTGGTCATCCTCTTCTATGGGGCTGCCGTCTACACCTACATGCTCCCC AGCTCCTACCACACCCCTGAGAAGGACATGATGGTATCTGTCTTCTATACCATCCTCACT CCGGTGCTGAACCCTTTAATCTATAGTCTTAGGAATAAGGATGTCATGGGGGCTCTGAAG AAAATGTTAACTGTGAGATTCGTCCTT |
| Conceptual translation |
MANHTGKLDFILMGLFRRSKHPALLSVVIFVVFLKALSGNAVLILLIHCDAHLHSPMYFF ISQLSLMDMAYISVTVPKMLLDQVMGVNKVSAPECGMQMFLYLTLAGSEFFLLATMAYDR YVAICHPLRYPVLMNHRVCLFLASGCWFLGSVDGFMLTPITMSFPFCRSWEIHHFFCEVP AVTILSCSDTSLYETLMYLCCVLMLLIPVTIISSSYLLILLTVHRMNSAEGRKKAFATCS SHLTVVILFYGAAVYTYMLPSSYHTPEKDMMVSVFYTILTPVLNPLIYSLRNKDVMGALK KMLTVRFVL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 248,488,658 | 248,488,658 | nonsense SNP | C/T | R/* | 1000GP (CEU, CHBJPT) |
| 1 | 100 | -100 | nonsense SNP | C/T | R/* | 1000GP (YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 248,644,944 | 248,790,408 | CopyNumber | Variation_0263 (DGV) |
| 1 | 248,595,681 | 248,817,382 | CopyNumber | Variation_2359 (DGV) |
| 1 | 248,500,109 | 248,865,374 | CopyNumber | Variation_3340 (DGV) |
| 1 | 248,060,959 | 249,167,690 | CopyNumber | Variation_8354 (DGV) |
| 1 | 248,522,680 | 249,158,239 | CopyNumber | Variation_8355 (DGV) |
| 1 | 248,242,528 | 248,817,382 | CopyNumber | Variation_8935 (DGV) |
| 1 | 248,626,918 | 248,830,541 | Inversion | Variation_37092 (DGV) |
| 1 | 248,646,428 | 248,728,407 | Inversion | Variation_59670 (DGV) |
| 1 | 248,646,734 | 248,656,766 | CopyNumber | Variation_74995 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| K13R | R24* | % Freq | CORP | |
|---|---|---|---|---|
| 1 | K | R | 63.06 | 0.098 |
| 2 | R | R | 24.35 | 0.098 |
| 3 | R | * | 7.37 | 1.200 |
| 4 | K | * | 5.22 | 1.200 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR2T5.aApr07-unspliced | main_exon | 5UTR | chr1 | 248,488,589 | 248,488,607 | + |
| CDS | chr1 | 248,488,607 | 248,489,533 | + | ||
| 3UTR | chr1 | 248,489,533 | 248,489,536 | + | ||