OR2U1P Olfactory Receptor
| Gene Symbol | OR2U1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | U |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | 974I11, AL050339-C, dJ974I11.3, OR6-23, hs6M1-24, HsOR6.3.13P, ORL3154 |
| External Ids | HGNC: 8278 GeneBank: BK004667 ORDB: ORL3154 |
| Build #39 labels | OR2U1P, OR2AU1P |
| Chromosomal location | 6:29,262,659-29,264,079 (-) |
| Cluster | 6@29 |
| Synteny | CLIC#12 |
| Remarks | Disrupted by LTR repeat |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2U2P | 70.19% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2W1 | 55% | 297 |
| Mouse | Or2w1 | 56% | 305 |
| Rat | Or2w1 | 55% | 305 |
| Cow | OR2U5 | 77% | 307 |
| Orang | OR2U2P | 70% | 312 |
| Horse | OR2U1 | 82% | 308 |
| Chimp | OR2U2P | 73% | 311 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | AA912855 |
| GNF Atlas2 | gnf1h10891_at |
Sequence information
| Nucleotide sequence |
ATGATCAATGATAGTTACTTTGGTTGGCTTATGCTCCTTGGGTTCCCTGGGAAGCCTCAG CTGGAGATGATCATCTCTGGGGTTGTCTTTTTCTTCTATGCAATTTCTTTGATGGGAAAT ATGGTCCTTATCCTGCTGCCATTACTGGATAAACATCTCCAAACCCCCATATATTTCTTT CTTAGAAATCTGGCTATCTTGGATCTTTGTTACACCACAAATATAGTCCCACAGATGTTG GTCAATGCCTGGGGTAAAGACAAGAAAATCACTTTTGGTGGCTGTGCTTTTCAACTTTTC ACTAATGTGACGCTATGCACGGTTGAATGTATGCTTCTGGCTGTGATGTCATATGACCCA TTCAATGCTGTCTGCAAGCCTCTGGACTATATGACCATAATGAACCCCCAACTCTGTCAA GGCCTGGTGGCCATGACCTGGTTAATTGGTGTCACTAATTGCATGATACTTTCCCCCTGT CCTGTGAGTCTTCCTCGATGCGGAGACCACCACCTGGATCACTATTTTTGTGAAATATCT GCAATGGTCAAAATTGCATGTGGGGCTACCACAGTCATGGAGGAAACGAAACCTTATTTG CATTGTGTTGTTGTTGTTGTTTTCATTTTCCTTGCATCACTTCTTCTCATTCTTGTGTCA TATGGCTTCATTGCTGTGGCTGTACTCAAGATCAAGTCTGCAGCAGGAAGACAAAAAGCA TTTGGGACCTGTTTCTCCCATCTCATTGTGGTATCCATCTTCTATGGGACTGTTAGATAT ATGTATATAGAGCCAGGAAACAGTCCATCTCAGGATGAGGGCAAACTTCTCCATATATTT TACTCCATTGTTACTCCCACCTTGAACCCATCCCACTAAGGAATAAGGAGTTCAAGTGGG CCATGAAAAGGCTTATTGGAAAA |
| Conceptual translation |
MINDSYFGWLMLLGFPGKPQLEMIISGVVFFFYAISLMGNMVLILLPLLDKHLQTPIYFF LRNLAILDLCYTTNIVPQMLVNAWGKDKKITFGGCAFQLFTNVTLCTVECMLLAVMSYDP FNAVCKPLDYMTIMNPQLCQGLVAMTWLIGVTNCMILSPCPVSLPRCGDHHLDHYFCEIS AMVKIACGATTVMEEKPYLHCVVVVVFIFLASLLLILVSYGFIAVAVLKIKSAAGRQKAF GTCFSHLIVVSIFYGTVRYMYIEPGNSPSQDEGKLLHIFYSIVTPTLNP/PLRNKEFKW AMKRLIG Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 29,230,806 | 29,230,806 | SNP | A/C | rs73403564 (DbSNP) | |
| 6 | 29,231,172 | 29,231,172 | SNP | A/G | rs9257657 (DbSNP) | |
| 6 | 29,230,921 | 29,230,921 | SNP | A/G | rs73743658 (DbSNP) | |
| 6 | 29,230,577 | 29,230,577 | SNP | C/A | rs3117328 (DbSNP) | |
| 6 | 29,230,683 | 29,230,683 | SNP | C/T | rs3130827 (DbSNP) | |
| 6 | 29,262,743 | 29,262,743 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 6 | 29,262,800 | 29,262,800 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 6 | 29,262,906 | 29,262,906 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 6 | 29,263,395 | 29,263,395 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 6 | 29,263,722 | 29,263,722 | SNP | G/A | 1000GP (CEU) | |
| 6 | 29,264,054 | 29,264,054 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 6 | 100 | -100 | SNP | A/C | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 6 | 29,228,436 | 29,231,956 | Deletion | #192 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| LOC646317.aApr07 | main_exon | CDS_partial | chr6 | 29,262,703 | 29,262,993 | - |