OR2U2P Olfactory Receptor
| Gene Symbol | OR2U2P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | U |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | hs6M1-23, OR6-24, AL050339-B, dJ974I11.2, HsOR6.3.14P, ORL3153 |
| External Ids | HGNC: 8279 GeneBank: BK004666, NG_004687 ORDB: ORL3153 |
| Build #39 labels | OR2U2P |
| Chromosomal location | 6:29,268,477-29,269,421 (-) |
| Cluster | 6@29 |
| Synteny | CLIC#12 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2U1P | 70.19% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2W1 | 54% | 304 |
| Mouse | Or2w4 | 55% | 308 |
| Rat | Or2w1c | 54% | 304 |
| Cow | OR2U2 | 84% | 311 |
| Orang | OR2W4 | 52% | 308 |
| Horse | OR2U1 | 77% | 315 |
| Chimp | OR2W1 | 55% | 304 |
Sequence information
| Nucleotide sequence |
ATGATCAATGATAGCCACTTCAGTGGTTTTATACTCCTTGGATTCACAGGGCAGCCTCAG CTTCAGATGATGATCTCTGGGGTTGTCTTTTTCTTCTACACTATTGCCTTCATGGGAAAT ATGGCCATCATCCTATTGTCTTTCCTAGATGACCATCTCCAAGTCCCCATGTACTTCTTC CTTAGAAATTTGGCCATCTTGGATCTCTGTTATACCACAAATATAGTCCCACAAATGTTG GTCAGTATCTGGGGCAAAGACAAAAGAATTACCTTTGGTGGGTGTGCCTTTCAACTTTTC ATTGATGTGGCACTGTACTCAGTTGAATGCATCCTTCTGTCCATGATGTCATATGATCGA CTCAATGCTATCTGCAAGCCTCTGCATCATATGACCATAATGAACCTCCAACTCTGCCAG GGCCTTGTGGTCATCTCCTGGGTAGTTGGTGTGATTAATTGCATCATACCTTCCCCTTAT GCCACGAGTCTTCCTCGATGTAGGAACCACCACCTAGACCACTTTTTTGTGTGTGTGAAA TGTCTGCAATGATCAAGATTCAAGATTGCATGTGTGGACACCACAGCCATGGAGGTAACC ACATTTGCCATGTGCCTGATTATAGTTCTTGTTCCTCTTCTTCTTATTCTTGTGTCATAT GGTTTCATTGCTGTGGCTGTACTCAAGATCAAGTCTGCAGCAGGAAGACAAAAAGCATTT GGGACCTGTTCCTCCCATCTCGTTGTGGTATCCATCTTCTGTGGGACAGTTACATACATG TATATACAGCCAGGAAACAGTCCAAATCAGAATGAGGGCAAACTTCTCAGTATATTTTAC TCCATTGTTACTCCCAGCTTGAACCCATTAATTTATACGGTAAGGAATAAGGAGTTCAAG GGGGCCATGAAGAGGCTAACTGGAAAAGAAAAAGATTGCATGGAA |
| Conceptual translation |
MINDSHFSGFILLGFTGQPQLQMMISGVVFFFYTIAFMGNMAIILLSFLDDHLQVPMYFF LRNLAILDLCYTTNIVPQMLVSIWGKDKRITFGGCAFQLFIDVALYSVECILLSMMSYDR LNAICKPLHHMTIMNLQLCQGLVVISWVVGVINCIIPSPYATSLPRCRNHHLDHFFVCVK CLQXRFKIACVDTTAMEVTTFAMCLIIVLVPLLLILVSYGFIAVAVLKIKSAAGRQKAF GTCSSHLVVVSIFCGTVTYMYIQPGNSPNQNEGKLLSIFYSIVTPSLNPLIYTVRNKEFK GAMKRLTGKEKDCME Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 29,236,722 | 29,236,722 | SNP | A/G | rs3130830 (DbSNP) | |
| 6 | 29,236,588 | 29,236,588 | SNP | A/G | rs17344111 (DbSNP) | |
| 6 | 29,236,317 | 29,236,317 | SNP | C/T | rs6910417 (DbSNP) | |
| 6 | 29,236,645 | 29,236,645 | SNP | G/T | rs7766902 (DbSNP) | |
| 6 | 29,268,811 | 29,268,811 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 6 | 29,268,868 | 29,268,868 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 6 | 29,268,945 | 29,268,945 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 6 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.