OR2W2P Olfactory Receptor
| Gene Symbol | OR2W2P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | W |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | dJ313I6.2, hs6M1-30P, HsOR6.2.5P, ORL3160 |
| External Ids | HGNC: 13970 GeneBank: AF399493, NG_004279 ORDB: ORL3160 |
| Build #39 labels | OR2W2P |
| Chromosomal location | 6:28,033,914-28,034,861 (+) |
| Cluster | 6@28a |
| Synteny | CLIC#12 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2W1 | 61.84% | 304 |
| OR2W3 | 67.55% | 302 |
| OR2W6P | 63.55% | 299 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2W3 | 67% | 310 |
| Mouse | Or2w2 | 81% | 304 |
| Rat | Or2w2 | 81% | 304 |
| Cow | OR2W2 | 82% | 304 |
| Orang | OR2W2 | 85% | 311 |
| Horse | OR2W2 | 85% | 304 |
| Chimp | OR2W3 | 68% | 304 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BF360154 |
Sequence information
| Nucleotide sequence |
CCACTGTCATGACCAACCAGAGCTGCCCAGAAACAGTTCATCTTACTGGGTTTCTCAGGC AGACCCAGGCTGGAGCATGTCCTCTTTGTGTTTGTCCTCATCTTCTACCTTGTGACCTTA GTGGGCAACATCATCATTATCTTGATCTCCCACCTGGACCCCTGCCTCCACATGCCCATG TACTTCTTCCTCACTAACTTGTCTTTCCTAGATCTCTGCTTCACCACCAGTTCTATCCCC CAGCTGCTTTTCAATCTAGGCAGCCCAGGCAAGACTATCAGCCACACGGGCTGTGCCATC CAGCTCTTCATGTTCCTGGGCCTGGGTGGCAAGAGTGTATTCTCTTGGCAGCCGTGGCCT ATGACCGCTTCATTGCAATCTGCAAGCCCCTTCACTATTCTGTCATTATGCACCCTCAGC TGTGCTGGAAGTTGGTGTCTGTGGCCCGGGGGTGTTGGACTCCTCAGTTCTCTAGTTATG TCTCCTGTGACTATGAAGCTGCCACGATGTGGAAGATGTAAGTTGAAACATTTCCTGTGT GAGATGCCAGCTCTAATAAAAATCACCTGTGTGGACACAGTGGCTATGGAGAGCACTGTT TTCACCTTATCGGTAGTAATTGTCCTGATGCCTTTGTGTCTTATCCTCATCTCTTATAGC TACATTGCCCTAGCAGTGCTGAGAATCAAGTCAGCCGCAGGAAGAAGGAAGGCCTTCAAT ATGTGCGGGTCCCACCTCACCGTGGTCTCCTTGTTTTATGGGAATATTATCTATATGTAT ATGCAACCATGAAATAATTCTTCTCAGGACCAAGGGAAGTTCCTTACCCTTTTCTACAAC TTAATGACCCCCATGTTAAACCCTGTCATCTATACACTGAGAAACAAGGATGTAAAAGGT GCACTGAAGAGGCTTGTGTCTAGAAAACACAGTGACAGTGACTGCTCT |
| Conceptual translation |
PLSXTRAAQKQFILLGFSGRPRLEHVLFVFVLIFYLVTLVGNIIIILISHLDPCLHMPM YFFLTNLSFLDLCFTTSSIPQLLFNLGSPGKTISHTGCAIQLFMFLGLGG/ECILLAAV AYDRFIAICKPLHYSVIMHPQLCWKLVSVARGCWTPQFSSYVS\TMKLPRCGRCKLKHF LCEMPALIKITCVDTVAMESTVFTLSVVIVLMPLCLILISYSYIALAVLRIKSAAGRRKA FNMCGSHLTVVSLFYGNIIYMYMQPXNSSQDQGKFLTLFYNLMTPMLNPVIYTLRNKDV KGALKRLVSRKHSDSDCS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 28,001,718 | 28,001,717 | Ins(1) | -/G | rs35607038 (DbSNP) | |
| 6 | 28,002,388 | 28,002,388 | SNP | A/G | rs149943 (DbSNP) | |
| 6 | 28,002,045 | 28,002,045 | SNP | A/G | rs9393873 (DbSNP) | |
| 6 | 28,034,267 | 28,034,267 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 6 | 28,034,361 | 28,034,361 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 6 | 28,034,610 | 28,034,610 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 6 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.