OR2W4P Olfactory Receptor
| Gene Symbol | OR2W4P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | W |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR6-5, OR6-6, HsOR6.2.4P, ORL3159 |
| External Ids | HGNC: 15071 GeneBank: BK004560, BK004743, NG_004261 ORDB: ORL3159 |
| Build #39 labels | OR2W4P |
| Chromosomal location | 6:27,977,150-27,978,072 (+) |
| Cluster | 6@28a |
| Synteny | CLIC#12 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2W1 | 61.31% | 305 |
| OR2W3 | 62.95% | 305 |
| OR2W6P | 66.12% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2W4 | 90% | 308 |
| Mouse | Or2w4 | 85% | 308 |
| Rat | Or2w6 | 68% | 308 |
| Cow | OR2W4 | 89% | 308 |
| Orang | OR2W4 | 90% | 308 |
| Horse | OR2W4 | 89% | 308 |
| Chimp | OR2W4 | 98% | 308 |
Sequence information
| Nucleotide sequence |
ATGGAAAAATCCAATGTCAGCTCAGTGTATGGTTTTATCTTGGTGGGTTTCTCTGATCGT CCCAAGCTGGAGATGGTGCTCTTTACAGTAAATTTTATTCTGTATTCAGTGGCTGTGCTG GGAAATTCAACCATAATCCTTGTGTGTATATTAGACTCTCAACTTCATACCCCAATGTAC TTCTTTCTGGCAAATCTTTCCTTTCTAGATCTCTGCTTCAGTACTAGTTGCATCCCACAA ATGCTGGTAAACCTCTGGGGCCCTGACAAGACTATTAGCTGTGCTGGCTGTGTTGTCCAG CTTTTCTCTTTCCTTTCTGTCAGGGGAATTGAGTGCATCCTTCTGGCTGTCATGGCCTAT GACAGCTATGCTGCAGTCTGCAAACCGTTGCGCTATCTGGTCATTATGCACCTCCAGCTG TGTCTAGGACTGATGGCTGCAGCCTGGGGGAGTGGACTGGTCAATGCCGTTGTCATGTCA CCACTAACAATGACCCTCTCCAGAAGTGGCCGCCGCCGAGTTAACCATTTCCTCTGTGAA AGCCAGCACTGATCAAGATGGCTTGTTTGGATGTTCGTGCAGTGGAAATGCTGGCTTTTG CTTTTGCCGTTCTCATTGTCCTACTGCCCCTCACTCTTATTCTTGTCTCCTACGGCTACA TTGCTGCAGCTGTGCTAAGCATCAAGTCAGCTGCCAGGCAATGGAAGGCCTTCCATACCT GTAGCTCTCACCTCACAGTGGTCTCCCTGTTTTATGGGAGCATCATCTATATGTATATGC AGCCAGGAAACAGTTCTTCCCAAGACCAAGGCAAGTTTCTCACTCTCTTCTACAACCTGG TGACTCCTATGTTGAATCTGCTCATCTATACTTTAAGGAATAAGGAGGTGAAAGGAGCAC TGAAGAAGGTTTTGGGGAGGCAA |
| Conceptual translation |
MEKSNVSSVYGFILVGFSDRPKLEMVLFTVNFILYSVAVLGNSTIILVCILDSQLHTPMY FFLANLSFLDLCFSTSCIPQMLVNLWGPDKTISCAGCVVQLFSFLSVRGIECILLAVMAY DSYAAVCKPLRYLVIMHLQLCLGLMAAAWGSGLVNAVVMSPLTMTLSRSGRRRVNHFLCE /PALIKMACLDVRAVEMLAFAFAVLIVLLPLTLILVSYGYIAAAVLSIKSAARQWKAFH TCSSHLTVVSLFYGSIIYMYMQPGNSSSQDQGKFLTLFYNLVTPMLNLLIYTLRNKEVKG ALKKVLGRQ Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 6 | 27,945,298 | 27,945,297 | Ins(1) | -/C | rs34858927 (DbSNP) | |
| 6 | 27,945,396 | 27,945,396 | SNP | A/G | rs28360499 (DbSNP) | |
| 6 | 27,945,741 | 27,945,741 | SNP | A/G | rs11752815 (DbSNP) | |
| 6 | 27,945,178 | 27,945,178 | SNP | A/G | rs12524914 (DbSNP) | |
| 6 | 27,945,640 | 27,945,640 | SNP | C/T | rs72848774 (DbSNP) | |
| 6 | 27,977,450 | 27,977,450 | SNP | C/T | 1000GP (CEU) | |
| 6 | 27,977,618 | 27,977,618 | SNP | G/A | 1000GP (CEU) | |
| 6 | 27,977,862 | 27,977,862 | SNP | C/T | 1000GP (CEU) | |
| 6 | 27,977,963 | 27,977,963 | SNP | A/G | 1000GP (CHBJPT) | |
| 6 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.