OR2X1P Olfactory Receptor
| Gene Symbol | OR2X1P1 (View this gene in GeneCards) |
| Family | 2 |
| Subfamily | X |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | |
| External Ids | HGNC: 31258 GeneBank: NG_004412 |
| Build #39 labels | OR2X1P |
| Chromosomal location | 1:247,938,889-247,939,633 (+) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR2AJ1 | 55.88% | 136 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR2AJ7 | 51% | 128 |
| Mouse | Or2aj4 | 52% | 130 |
| Rat | Or2aj4-ps | 51% | 130 |
| Cow | OR2AJ10P | 54% | 126 |
| Orang | OR2AJ1 | 54% | 130 |
| Horse | OR2AJ15 | 53% | 134 |
| Chimp | OR2X2P | 90% | 122 |
Sequence information
| Nucleotide sequence |
TACCTGGGTATTGTGGTGGAGATACACATAGTCTTTTGAACATTCCGTTGTAGGTCGCTG GTAGCTGGATATGTCCTTTAAACTTTTGTGGCAATTCATTTGAGAAGAAACGCAGCTTTT TCTATTGAGTTCTTATGCTATAAGTAAAGGATGCAAGACATTAATTAGACAAAATAAGGT AAAATTTTGTATTCGCTTAGAGAGTTTAAGAGGCTATTAGCCACTAGTCTCTATAGTGCC TAAGTAAATCGATTCTGCTTAATAAACTGCTACCTGGCTTAGTAAGTAAACAAATTGAAA CTTATTTTAGGAAAGAAATATATATTCTTATATCTACATCAGATTCTCTTATGTAGAAAC ACTAGAGGGTGAATGAGGAGTTAATGTAAGCAGCATCATATTTTTGCTCATTCCTTTCTC TATGATTTCTGCTTCTTCTGTCCAAATTCTGTGAGGTGTCCTCTAGATGAAATTATCACA GGCATGGAAAAGGTCATTTTCCACTTGGTCCATCCTCATGATTGCAGTTGTAACATACTG GGACTCATTCATTTTCACATATGTATATGAGACTTAAATCATCCACATTTCAGGCCAGGT TAAGTTTCTAGAAATATTCTATGCTTTCCTTGCACTTACACTCAATCCTGTCGTCTACAG CGTTGGCACTGACAGTGTTCTGGTGGCAATGAAAAATATGCTCTAGAGCAACATTCTACA TAAAAAAAAGAATAGGAAAATTCCT |
| Conceptual translation |
YLGIVVEIHIVFXFRCRSLVAGYVLXFVAIHLRRNAAFSIEFLCYKXMQDINXKX KILYSLREFKRLLATSLYSAXNRF\XTATWLSKXNXLFXRNIYSYIYIRFSYVE TLEGEXVNVSSIIFLLIPFSMISASSVQILXVLXKLSQAWKRSFSTWSILMIAVVTY WDSFIFTYVYETXIHISGQVKFLEIFYAFLALTLNPVVYSVGTDSVLVAMKNMLXNIL HKKKNRKIP Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI) | |
| 1 | 247,939,250 | 247,939,250 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 1 | 247,939,550 | 247,939,550 | SNP | G/A | 1000GP (CEU) | |
| 1 | 248,102,552 | 248,102,552 | SNP | T/C | rs1538198 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 247,074,430 | 248,328,835 | CopyNumber | Variation_6816 (DGV) |
| 1 | 247,714,585 | 248,277,146 | CopyNumber | Variation_3339 (DGV) |
| 1 | 247,753,207 | 248,376,070 | CopyNumber | Variation_8353 (DGV) |
| 1 | 247,753,334 | 248,322,316 | CopyNumber | Variation_2358 (DGV) |
| 1 | 247,849,473 | 248,277,638 | CopyNumber | Variation_48302 (DGV) |
| 1 | 247,849,473 | 248,285,441 | CopyNumber | Variation_48303 (DGV) |
| 1 | 248,060,959 | 249,167,690 | CopyNumber | Variation_8354 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.