OR3D1P Olfactory Receptor
| Gene Symbol | OR3D1P1 (View this gene in GeneCards) |
| Family | 3 |
| Subfamily | D |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | |
| External Ids | HGNC: 25339 |
| Build #39 labels | |
| Chromosomal location | 1:247,666,881-247,667,816 (+) |
| Cluster | 1@248 |
| Synteny | CLIC#5 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR5V1 | 37.94% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Mouse | Or5ae1 | 59% | 313 |
| Rat | Or5ae1b | 58% | 313 |
| Cow | OR5AE3 | 59% | 313 |
Sequence information
| Nucleotide sequence |
ATGGGTGTTCACAATTTGTTCACGGTGACTCAGTTTATCCTTATAGGGCTCTCTTACTTC TCCAATGAGCACTACCTTCTTTTTGTGGCCCTTGCCATTATCTGTCAGGTGTTCTTGGTG CGAAGTGGAGACATTCTCTTGGCCATTGGGACTGTGATTAAGTTGCACACTACTCATGTA TTATTTTTTGGCAAATGTGTCCATCTTAGACATATTGTGTTCATCAGCTACTATACCTAA GATGCCTAAGATTCTCTAGACTGAGGATCACAGCATTTCTTTTGTTAGGTGAGCTTTGCA GCCCTATTTCCTAGTGGCCTGGGCTGGGAAGAAAGCTTTCTCACTGTTACGGCTTATGAC TGGTGTGTGGTCACATGTTTCTCCCTTTGTTACATCCTGATCATGAACAAATTGGCTCTG TCCAGCTGGTTTATGGGACCTGAGCAGCTGGGTTTCTAAATTTCCTCCTCCTCCACGTAG TGTCTACCCTCTGCCTGTCTTTCTGCAAGCCTGATCGAGTTAACCAGTATTACTGTGATA TCTCACCGATGGGGGCCCTGTTGTGCCAGTCCATGCACCTGGCAAACATGCTTGTTTTAG TGGAATCAGTTATCTTGGGGATCAGTGCTTTTCTGGCTGCCTTTAACTTTTACATATACA TCATCTCCACTATCCTAAAGATCCAGTGTGTAGAGTGGAGTGCAAAGTGCTTCTCTACAT GCACTTCCCACCTCCTTACGGTCTGTTTGTTCTATGGCATATTGACATTTACCTACATTT ACTCCTTCTCCAGTCAACACTCACATGTCTAAGGCAAGCCCAGATCTAGCCACAGACAGG CTCATCTCTATGCTATACAGAGTTATTACCCTGATGTTTAACTTCATCACTGACAACCTG AGAAACACAGAGGTAAAAGGAGCCTCAGAAAGGTTT |
| Conceptual translation |
MGVHNLFTVTQFILIGLSYFSNEHYLLFVALAIICQVFLVRSGDILLAIGTVIKLHTT\ YYFLANVSILDILCSSATIPKMPKILXEDHSISFVRXLQPYFLV/LGWEESFLTVTA YDWCVVTCFSLCYILIMNKL/SVQLVYGTXAGFLNFLLLHVVSTLCLSFCKPDRVNQY YCDISPMGALLCQSMHLANMLVLVESVILGISAFLAAFNFYIYIISTILKIQCVEWSAKC FSTCTSHLLTVCLFYGILTFTY\TPSPVNTHMSKASPDLATDRLISMLYRVITLMFNFI TDNLRNTEVK/SLRKV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) | |
| 1 | 247,666,904 | 247,666,904 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 1 | 247,666,923 | 247,666,923 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 1 | 247,667,428 | 247,667,428 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 1 | 247,830,206 | 247,830,206 | SNP | A/G | rs28710259 (DbSNP) | |
| 1 | 247,830,225 | 247,830,225 | SNP | A/G | rs28599884 (DbSNP) | |
| 1 | 247,830,257 | 247,830,257 | SNP | C/T | rs73133447 (DbSNP) | |
| 1 | 247,830,730 | 247,830,730 | SNP | A/G | rs4925699 (DbSNP) | |
| 1 | 247,831,012 | 247,831,012 | SNP | C/T | rs73133449 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 247,074,430 | 248,328,835 | CopyNumber | Variation_6816 (DGV) |
| 1 | 247,714,585 | 248,277,146 | CopyNumber | Variation_3339 (DGV) |
| 1 | 247,753,207 | 248,376,070 | CopyNumber | Variation_8353 (DGV) |
| 1 | 247,753,334 | 248,322,316 | CopyNumber | Variation_2358 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.