OR4A12P Olfactory Receptor
| Gene Symbol | OR4A12P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-116, HsOR11.11.2P, ORL3592 |
| External Ids | HGNC: 15149 GeneBank: BK004553, NG_004243 ORDB: ORL3592 |
| Build #39 labels | OR4A12P |
| Chromosomal location | 11:55,325,756-55,326,700 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A13P | 75.65% | 308 |
| OR4A1P | 76.47% | 306 |
| OR4A7P | 77.15% | 302 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A39 | 70% | 308 |
| Mouse | Or4a39 | 71% | 312 |
| Rat | Or4a77e | 67% | 312 |
| Cow | OR4A2 | 64% | 303 |
| Orang | OR4A47P | 63% | 294 |
| Horse | OR4A124 | 71% | 311 |
| Chimp | OR4A13 | 76% | 315 |
Sequence information
| Nucleotide sequence |
ATGGGACTGAGTAACAATGTTACAGAACTTTTCCTCCTGGGCCTCACTCAGGATCTCGAT GTGCAAAATGCATTATTTGTCATGTTTTTACTAACATACATTGTGACTATGGTGGGGAAC CTGCTCATTGTGGTGACTATTATTGCCACCCCATCCTTGGGCTCCCCAATGTACTTTTTC CTTGCCTGCCTGTCATTTATAGATGCTGTGTATTCCACCACCATTTATCCCAAATTGGTT GTAGACTAACTCCATAATTAAAAGACTATTTTGTTCCCAACTTGCATGGGCCAGCCACTT ACAGACCACTTATTTGGTGGTGTTGAGGTCTTTTTTTCTGTTGGTGATGGCCTGTGATCG CTATGTGGCCATCTGTAAGCCACTGCACTATTTTACCATCATGAATCGACAGGTTTTCAT CCTTCTGTTGGTAGTGGCTGTGACTGGAGTTTTGTGCGTTCTGTGTTCCAAATTGTTGTT GTGTACAGTCTCCCTTTCTGTGGCCCCAATGTCATTGACCACTTTTTCTGTAACATGTAC CCATTAATGGAAATGGCATGAACTGACACCTACTTTATAGGCCTCACTGTGGTTTTCAAG GTTGAAGCAATCTGTGTGGTCATCTTCACCCTTCTACTAATCTCCTCTGGCGTCATCCTA ATCTCCCTTAAAACTTACAGTCAGGAAGGGAGGCATAAAGCCCTGTTTACCTGCAGCTCC CGCATTACTGTAGTTGTCCTCTTTTTTGTTCCCTGTATTTTCATGTATGTTAGACCTGTT TTTAACTTCCCCATTGATAAATTTATTATTGTGTTTTATACAGTTATCACACCCATGCTG AATCCTTTAATATACATGTTGAGAAATTCATAGACGAGAAATGCTATAGAAAACCCCTAG TGTAAAAAATTAACTGTAGATAGAATAAGAGTGTACATCTTCATG |
| Conceptual translation |
MGLSNNVTELFLLGLTQDLDVQNALFVMFLLTYIVTMVGNLLIVVTIIATPSLGSPMYFF LACLSFIDAVYSTTIYPKLVVDXHNXTILFPTCMGQPLTDHLFGGVEVFF\LVMACD RYVAICKPLHYFTIMNRQVFILLLVVAVTG/FVRSVFQIVVVYSLPFCGPNVIDHFFCN MYPLMEMAXDTYFIGLTVVFKVEAICVVIFTLLLISSGVILISLKTYSQEGRHKALFTC SSRITVVVLFFVPCIFMYVRPVFNFPIDKFIIVFYTVITPMLNPLIYMLRNSXRNAIEN PXKKLTVDRIRVYIFM Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,094,021 | 55,094,020 | Ins(1) | -/C | rs34579429 (DbSNP) | |
| 11 | 55,093,248 | 55,093,248 | SNP | A/G | rs61918393 (DbSNP) | |
| 11 | 55,093,883 | 55,093,883 | SNP | A/G | rs12287562 (DbSNP) | |
| 11 | 55,093,331 | 55,093,331 | SNP | A/T | rs72480337 (DbSNP) | |
| 11 | 55,093,735 | 55,093,735 | SNP | C/T | rs1834309 (DbSNP) | |
| 11 | 55,093,600 | 55,093,600 | SNP | C/T | rs9943648 (DbSNP) | |
| 11 | 55,093,736 | 55,093,736 | SNP | C/T | rs1834310 (DbSNP) | |
| 11 | 55,093,625 | 55,093,625 | SNP | G/T | rs1364767 (DbSNP) | |
| 11 | 55,325,772 | 55,325,772 | SNP | A/G | 1000GP (CEU) | |
| 11 | 55,325,826 | 55,325,826 | SNP | C/T | 1000GP (CEU) | |
| 11 | 55,326,149 | 55,326,149 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | T/G | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
| 11 | 55,083,434 | 55,156,434 | CopyNumber | Variation_48825 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.