OR4A1P Olfactory Receptor
| Gene Symbol | OR4A1P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-30, HsOR11.9.1P, ORL3651 |
| External Ids | HGNC: 8289 GeneBank: AF065869, NG_002173 ORDB: ORL3651 |
| Build #39 labels | OR4A1P, OR4A20P |
| Chromosomal location | 11:49,898,264-49,899,186 (-) |
| Cluster | 11@50 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A11P | 82.12% | 302 |
| OR4A13P | 79.8% | 307 |
| OR4A40P | 82.67% | 300 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A39 | 75% | 302 |
| Mouse | Or4a39 | 73% | 305 |
| Rat | Or4a81 | 72% | 304 |
| Cow | OR4A2 | 68% | 303 |
| Orang | OR4A47P | 65% | 304 |
| Horse | OR4A148P | 74% | 305 |
| Chimp | OR4A13P | 85% | 303 |
Sequence information
| Nucleotide sequence |
ATGAGACAGAATAATAATATTACAGAATTTGTCCTCCTGGGCTTCTCTCAGGATCTGGAT GTGCAAAAAGCATTATTTGTCATATTTTTACTCACATACTTGGTGACAGTGGTGGGGAAC CTGCTCATTGTGGTGACTATTATTGCCAGCCCTTCCTTGGGCTCCTCAATGTACTTCTTC CTTGCCTGCCTGTCATTTATAGATGCTGCATATTCCACTACAATTTCTCCCAAATTGATT GTAGACTTACTCTGTGATAAAAAGACTATTTCTTTCCCAGCTTGCATGGGCCAGTTATTT ATATACCACTTGTTTGGTGGTTCTGAGGTCTTCCTTCTTGTGGTGATGGCCTGTGATCAC TATGTGGCCATCTGTAAGCCACTGCACTATTTGACCATCATGAATCGACAGGTTTGAATC CTTCTGTTGGTGGTGGTCGTGACTGGAGGTTTTCTGCATTCTGTGTTTCAAATTGTTGTT GTATACAGTCTCGCTTTCTGTGGCCCCAATGTCATTGACTACTTTGTCTGTGACATGTAC CCATTATTGGAACTGGTATGCACTGACACCTACTTTATTGGCCTTACTGTTTTTGTCAAT GGTGGAACAATCTGTATAGTCGTCTTCACCCTTCTACTAATCTCCTATGGAGTCATCCTA AACTCCCTTAAAACTTACAGTCAAGAAGGGAGGCATAAAGTCCTGTTTACCTGCAGCTCC CACATTATCGTCTTTGCCCTCTTTTTTGTTCCCTGTATTTTCATGTATGTTAGACCTGTT TCAAACATCCTTTTGATAAATTCCTGACAGTGTTTTATACAGTTATCACACCCATGTTGA ATCCTTTAATATACACATTGAGAAATTCAGAGATGAGAAATTCTGTAGAAACACTCTTGT GTAAAAAGTTAACTGTATTAGAG |
| Conceptual translation |
MRQNNNITEFVLLGFSQDLDVQKALFVIFLLTYLVTVVGNLLIVVTIIASPSLGSSMYFF LACLSFIDAAYSTTISPKLIVDLLCDKKTISFPACMGQLFIYHLFGGSEVFLLVVMACDH YVAICKPLHYLTIMNRQVXLLLVVVVTGGFLHSVFQIVVVYSLAFCGPNVIDYFVCDMY PLLELVCTDTYFIGLTVFVNGGTICIVVFTLLLISYGVILNSLKTYSQEGRHKVLFTCSS HIIVFALFFVPCIFMYVRPVSN/PFDKFLTVFYTVITPMLNPLIYTLRNSEMRNSVETL LCKKLTVLE Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI) | |
| 11 | 49,898,505 | 49,898,505 | SNP | G/A | 1000GP (CEU) | |
| 11 | 49,919,836 | 49,919,836 | Del(1) | -/T | rs34625441 (DbSNP) | |
| 11 | 49,920,573 | 49,920,573 | SNP | G/A | rs847638 (DbSNP) | |
| 11 | 49,920,594 | 49,920,594 | SNP | C/T | rs847637 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 49,732,291 | 50,117,547 | CopyNumber | Variation_6919 (DGV) |
| 11 | 49,823,034 | 49,922,563 | CopyNumber | Variation_85773 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.