OR4A1P Olfactory Receptor
Gene Symbol | OR4A1P1 (View this gene in GeneCards) |
Family | 4 |
Subfamily | A |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | OR11-30, HsOR11.9.1P, ORL3651 |
External Ids | HGNC: 8289 GeneBank: AF065869, NG_002173 ORDB: ORL3651 |
Build #39 labels | OR4A1P, OR4A20P |
Chromosomal location | 11:49,898,264-49,899,186 (-) |
Cluster | 11@50 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR4A11P | 82.12% | 302 |
OR4A13P | 79.8% | 307 |
OR4A40P | 82.67% | 300 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR4A39 | 75% | 302 |
Mouse | Or4a39 | 73% | 305 |
Rat | Or4a81 | 72% | 304 |
Cow | OR4A2 | 68% | 303 |
Orang | OR4A47P | 65% | 304 |
Horse | OR4A148P | 74% | 305 |
Chimp | OR4A13P | 85% | 303 |
Sequence information
Nucleotide sequence |
ATGAGACAGAATAATAATATTACAGAATTTGTCCTCCTGGGCTTCTCTCAGGATCTGGAT GTGCAAAAAGCATTATTTGTCATATTTTTACTCACATACTTGGTGACAGTGGTGGGGAAC CTGCTCATTGTGGTGACTATTATTGCCAGCCCTTCCTTGGGCTCCTCAATGTACTTCTTC CTTGCCTGCCTGTCATTTATAGATGCTGCATATTCCACTACAATTTCTCCCAAATTGATT GTAGACTTACTCTGTGATAAAAAGACTATTTCTTTCCCAGCTTGCATGGGCCAGTTATTT ATATACCACTTGTTTGGTGGTTCTGAGGTCTTCCTTCTTGTGGTGATGGCCTGTGATCAC TATGTGGCCATCTGTAAGCCACTGCACTATTTGACCATCATGAATCGACAGGTTTGAATC CTTCTGTTGGTGGTGGTCGTGACTGGAGGTTTTCTGCATTCTGTGTTTCAAATTGTTGTT GTATACAGTCTCGCTTTCTGTGGCCCCAATGTCATTGACTACTTTGTCTGTGACATGTAC CCATTATTGGAACTGGTATGCACTGACACCTACTTTATTGGCCTTACTGTTTTTGTCAAT GGTGGAACAATCTGTATAGTCGTCTTCACCCTTCTACTAATCTCCTATGGAGTCATCCTA AACTCCCTTAAAACTTACAGTCAAGAAGGGAGGCATAAAGTCCTGTTTACCTGCAGCTCC CACATTATCGTCTTTGCCCTCTTTTTTGTTCCCTGTATTTTCATGTATGTTAGACCTGTT TCAAACATCCTTTTGATAAATTCCTGACAGTGTTTTATACAGTTATCACACCCATGTTGA ATCCTTTAATATACACATTGAGAAATTCAGAGATGAGAAATTCTGTAGAAACACTCTTGT GTAAAAAGTTAACTGTATTAGAG |
Conceptual translation |
MRQNNNITEFVLLGFSQDLDVQKALFVIFLLTYLVTVVGNLLIVVTIIASPSLGSSMYFF LACLSFIDAAYSTTISPKLIVDLLCDKKTISFPACMGQLFIYHLFGGSEVFLLVVMACDH YVAICKPLHYLTIMNRQVXLLLVVVVTGGFLHSVFQIVVVYSLAFCGPNVIDYFVCDMY PLLELVCTDTYFIGLTVFVNGGTICIVVFTLLLISYGVILNSLKTYSQEGRHKVLFTCSS HIIVFALFFVPCIFMYVRPVSN/PFDKFLTVFYTVITPMLNPLIYTLRNSEMRNSVETL LCKKLTVLE Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 100 | -100 | SNP | G/A | 1000GP (YRI) | |
11 | 49,898,505 | 49,898,505 | SNP | G/A | 1000GP (CEU) | |
11 | 49,919,836 | 49,919,836 | Del(1) | -/T | rs34625441 (DbSNP) | |
11 | 49,920,573 | 49,920,573 | SNP | G/A | rs847638 (DbSNP) | |
11 | 49,920,594 | 49,920,594 | SNP | C/T | rs847637 (DbSNP) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 49,732,291 | 50,117,547 | CopyNumber | Variation_6919 (DGV) |
11 | 49,823,034 | 49,922,563 | CopyNumber | Variation_85773 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.