OR4A21P Olfactory Receptor
| Gene Symbol | OR4A21P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-124, HsOR11.11.12P, ORL3652 |
| External Ids | HGNC: 15158 GeneBank: AB065772, BK004755, NG_004238 ORDB: ORL3652 |
| Build #39 labels | OR4A21P |
| Chromosomal location | 11:55,491,156-55,492,145 (+) |
| Cluster | 11@56 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A15 | 90.58% | 308 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A15 | 80% | 313 |
| Mouse | Or4a15 | 82% | 310 |
| Rat | Or4a15b | 80% | 316 |
| Rat | Or4a15 | 82% | 301 |
| Cow | OR4A15P | 80% | 306 |
| Orang | OR4A47P | 63% | 300 |
| Horse | OR4A15 | 81% | 307 |
| Chimp | OR4A15 | 87% | 322 |
Sequence information
| Nucleotide sequence |
TTTTGTTTACAGGTTCTGACACCTTAGTCCAATACCTTCAGAAGAACACATGGAAAATAG GAAAAATTGACTTAATTCATCCTCTTGGGGCTCACACAGAACCCTGAGGGCCAAAAAGTT TTATTTGTCACATTCTTACTCATCTACATTGTGACGATAATGGGCAACCTCCTTATCATG GTGACCATCATGGCCAGCCAGTCCCTGGGTTCCCCCATGTACTTTTTTCTGGCTTCTTTA TCATTTATACATACCGTCTATTATACTGCCATTGCTCCCAAAATGATTGTTGACCTGCTC TCTGAGAAAAAGACCATTTCTTTTCAGGGTTGTATGGCTCAACTTTTTATGGATCATTTA TTTGCTGGTGCTGAAGTCATTCTTCTGGTGGTAATGGCCTATGATCAATATGTGGCCATC TGTAAGCCTCTTCATTATTTGATCATCATGAATTGTCGAGTCTGTGTTCTCATGCTGTTG GTGGCCTGGATTGGAGGCTTTCTTCACTCATTGGTTCAATTTCTCTTTATTTATCAGCTC CCTTTCTGTGGACCCAATGTCATTGACAACTTCCTGTGTGATTTGTATCCCTTATTGAAA CTTGCTTGCACCAATACCTATGTCACTGGGCTTTCTATGATAGCTAATGGTGGAGCGATT TGTACTGTCACCTTCTTCCCTCTCCTGCTTTCCTATGGGGTCATATTACCCTCTCTTAAG ACTCAGAGTTTGGAAGGGAAATGCAAAGCTTTCTACACCTGTGCATCCCACATCACTGTG ATCACTTTATTCTTTGTCCCCTGCATCTTCCTGTTTGCAAGGCCCAACTCCACCTTTCCC ATTGATAAATCCATGACTGTGGTTTTAACTTGTATAACTCCCATGCTGAAACCACTAATC TATGCCCTGAGGAATGCAGAAATGAAAAGTGCCATGAGGAAACTTTGGAGTGAAAAAGTA AGCTTAGCTGGAAAAGGGCTGTATCCCTCA |
| Conceptual translation |
FCLQVLTPXNTFRRTHGKXKLTXILLGLTQNPEGQKVLFVTFLLIYIVTIMGNLLIM VTIMASQSLGSPMYFFLASLSFIHTVYYTAIAPKMIVDLLSEKKTISFQGCMAQLFMDHL FAGAEVILLVVMAYDQYVAICKPLHYLIIMNCRVCVLMLLVAWIGGFLHSLVQFLFIYQL PFCGPNVIDNFLCDLYPLLKLACTNTYVTGLSMIANGGAICTVTFFPLLLSYGVILPSLK TQSLEGKCKAFYTCASHITVITLFFVPCIFLFARPNSTFPIDKSMTVVLTCITPMLKPLI YALRNAEMKSAMRKLWSEKVSLAGKGLYPS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 55,258,709 | 55,258,709 | SNP | A/C | rs61919683 (DbSNP) | |
| 11 | 55,258,823 | 55,258,823 | SNP | A/G | rs61747878 (DbSNP) | |
| 11 | 55,258,924 | 55,258,924 | SNP | A/G | rs17157421 (DbSNP) | |
| 11 | 55,259,484 | 55,259,484 | SNP | A/T | rs17157424 (DbSNP) | |
| 11 | 55,258,881 | 55,258,881 | SNP | C/G | rs17494249 (DbSNP) | |
| 11 | 55,258,726 | 55,258,726 | SNP | C/G | rs17158628 (DbSNP) | |
| 11 | 55,259,016 | 55,259,016 | SNP | C/T | rs34847108 (DbSNP) | |
| 11 | 55,259,113 | 55,259,113 | SNP | C/T | rs61730927 (DbSNP) | |
| 11 | 55,259,583 | 55,259,583 | SNP | G/A | rs531971 (DbSNP) | |
| 11 | 55,259,085 | 55,259,085 | SNP | T/C | rs556754 (DbSNP) | |
| 11 | 55,259,384 | 55,259,384 | SNP | T/C | rs2034987 (DbSNP) | |
| 11 | 55,491,233 | 55,491,233 | SNP | C/A | 1000GP (CEU) | |
| 11 | 55,491,405 | 55,491,405 | SNP | C/G | 1000GP (CEU) | |
| 11 | 55,491,609 | 55,491,609 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 55,491,860 | 55,491,860 | SNP | A/G | 1000GP (CEU) | |
| 11 | 55,492,107 | 55,492,107 | SNP | G/A | 1000GP (CEU) | |
| 11 | 55,491,911 | 55,491,911 | SNP | C/T | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | C/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
| 11 | 55,222,420 | 55,621,884 | CopyNumber | Variation_3852 (DGV) |
| 11 | 55,183,726 | 55,258,691 | CopyNumber | Variation_6922 (DGV) |
| 11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
| 11 | 55,121,706 | 55,340,753 | CopyNumber | Variation_9185 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.