OR4A3P Olfactory Receptor
| Gene Symbol | OR4A3P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3572 |
| External Ids | HGNC: 15160 GeneBank: NG_004237 ORDB: ORL3572 |
| Build #39 labels | OR4A3P |
| Chromosomal location | 11:54,662,580-54,663,450 (-) |
| Cluster | 11@51 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A48P | 67.91% | 215 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A47 | 56% | 126 |
| Mouse | Or4a47 | 54% | 114 |
| Rat | Or4a47 | 56% | 114 |
| Cow | OR4A47D | 55% | 121 |
| Orang | OR4A47P | 56% | 117 |
| Horse | OR4A140P | 45% | 170 |
| Chimp | OR4AL2P | 88% | 120 |
Sequence information
| Nucleotide sequence |
TTTAAGCTATCATCTTTTTTCAAAACACCTTGTGCGTGCCTCCTGGCAGTTGGTGAACTT TCTGATGTATTCAACAGCATTGATCTCCACTTTGTCTCTGCATGTTCTCCTTTTATTTTA ATTTTTACCATTTTTTTTCCCACATGAAAGGTCTTGCAGTCACTTAGAAATGCTGAGATA AATTGACTGGTATAAAGTAAGGTATCTGATTAATGAAATTTACTCTAAAACTAATTGGCC TTTTCATGGACTATAAGACTATGCACAACCACTTCGTACTCAAACATGCAATTCTCTTTC CAATGTTGTATGACCCAGTACCCAGCTCTTCAAAGCACATTTTTTTTTCTTGGTAGATCT CAGGTCTTCCTTCTGTTGCTGATGGCCTAGACAACTATAGGGCCATCTGAAAGTCCTTGC AGTATTTGGTTGTCATGAAGCAATGGCTGTGTGTTGTGCTGCTGGTGGTGCCCTGGGCTG GAGGATTTTTGCACACAGTAATTCAACTTGGCCTTATTCATGGGCTCCCATCTTATGACC CCAATGTCATTGGTCGTTTTGTCTGTGACATGGACCCCTTAATGAAGCTTGTCTGTGACT ATACACTCAACAGATTTGTCTATTTTGCAGGTCATGACTTAAATACTAGGTTTTATATAT TTCGTTTATATTCAGACTGGACTGTTTCCTTTTGGTGATTTGACTTTGGTATCCTTTTGT AATTTTTTCCCTAGAGGACATGATTCTATAAATCTTGTTATACATAGTTATTATCCCTGT GGCATCTCCGGAGATACAGAGCCTACCCTCAGAATTATGATAAAGGTCCCAATGAATTTA ATTAGAGAAGAATCACCTTTGGAGATGCACC |
| Conceptual translation |
FKLSSFFKTPCACLLAVGELSDVFNSIDLXLCLCMFSFYFNFYHFFSHMKGLAVTXCXbr/>DKLTGIKXIXM\LLXXAFSWTIRLCTTTSYSNMQFSFQCCMTQYPALQSTFFFLG RSQVFLLLLMA/DNYRAIXSLQYLVVMKQWLCVVLLVVPWAGGFLHTVIQLGLIHGLP SYDPNVIGRFVCDMDPLMKLVCDYTLNRFVYFAGHDL/YXLYISFIFRLDCFLLVIX WYPFVIFSLE\XYKSCYTXLSL/ASPEIQSLPSELXRSQXXEKNHLWRCT Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | G/T | 1000GP (YRI, YRI, YRI) | |
| 11 | 51,455,848 | 51,455,848 | SNP | C/T | rs547549 (DbSNP) | |
| 11 | 51,455,901 | 51,455,901 | SNP | C/G | rs4486609 (DbSNP) | |
| 11 | 51,456,144 | 51,456,144 | SNP | C/G | rs12574159 (DbSNP) | |
| 11 | 51,456,498 | 51,456,498 | SNP | A/C | rs61891433 (DbSNP) | |
| 11 | 51,456,502 | 51,456,502 | SNP | A/T | rs61891434 (DbSNP) | |
| 11 | 51,456,554 | 51,456,554 | SNP | T/C | rs496572 (DbSNP) | |
| 11 | 54,662,725 | 54,662,725 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 54,662,781 | 54,662,781 | SNP | C/A | 1000GP (CEU) | |
| 11 | 54,663,065 | 54,663,065 | SNP | A/T | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 51,192,824 | 51,563,636 | CopyNumber | Variation_8689 (DGV) |
| 11 | 51,228,146 | 51,525,878 | CopyNumber | Variation_48823 (DGV) |
| 11 | 51,372,036 | 51,529,002 | CopyNumber | Variation_53111 (DGV) |
| 11 | 51,453,829 | 51,456,799 | Deletion | #216 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.