OR4A42P Olfactory Receptor
| Gene Symbol | OR4A42P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.8.20P |
| External Ids | HGNC: 31261 GeneBank: NG_004414 |
| Build #39 labels | |
| Chromosomal location | 11:48,610,063-48,610,996 (+) |
| Cluster | 11@48 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A5 | 91.5% | 306 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A39 | 76% | 302 |
| Mouse | Or4a39 | 73% | 314 |
| Rat | Or4a77e | 70% | 310 |
| Cow | OR4A2 | 69% | 303 |
| Orang | OR4A47P | 63% | 304 |
| Horse | OR4A124 | 73% | 314 |
| Chimp | OR4A5P | 89% | 306 |
Sequence information
| Nucleotide sequence |
ATGAGACAGAATAACAATATTTCAGAATTTGTCCTCCTGGGCTTTTCTCAGGATCCTGGT GTGCAAAAAGCATTATTTGTCATGTTTTTACTCACACACTTGGTGACAGTGGTGGGGAAC CTGCTCATTGTGGTGACTATTATTGCCAGCCCTTCCTTGGGTTCCCCGGTGTATTTCTTC CTTGCTTGCCTGTCATTTATAGATGCTGCATATTCCACTACCATTTCTCCCAAGTTAATT GTAGACTTACTCTGTGATAAAAAGACTATTTCCTTCCCAGGTTGCATGGGCCAGCTATTT ATAGACCATTTCTTTGGCAGTGCTGAGGTTTTCCTTCTGGTGGTGATGGCCTGTGATCGC TATGTGGCCATCTGTAAGCCACTGCACTATTTGACCATCATGAATCGACAGGTTTGCTTC CTTCTGTTGGTGGTGGCCATGATTGGAGGTTTTGTGCATTCTGCGTTTCAAATTGTTGTG TACAGTCTCCCTTTCTGTGGTCCCAATGTCATTGATCATTTCGGTTGTGACATGTACCCA TTACTGAAAGTGGCGTGCACTGACACCTACTTTGTAGGCCTCACTGTTGTTTTCAATAGT GGAGCAATCTGTATGGTCATTTTCACCCTTCTGTTAATCTCCTGTGGAGTCATCCTAAAC TCCCTTAAACAGTCAGGAAAAGAGGCATAAAGCCTTGTCTACCTGCAGCTCCCGCATTAC CGTGGTTGCCCTCTTTTTTGTACCCTGTATTTTCATATATGTTAGACCTGTTTCAAACTT TCCTACTGATAAGTTCATGACTGTGTCTTATACCATTATCACACACATGTTGAGTCCTTT AATATACACGTTGAGAAATTAAGAGATGAGAAATGCTATAGAAAAACTCTTGGGTAAAAA GTTAACTATATTTAGTAATAGGAGTGTCCGTCCT |
| Conceptual translation |
MRQNNNISEFVLLGFSQDPGVQKALFVMFLLTHLVTVVGNLLIVVTIIASPSLGSPVYFF LACLSFIDAAYSTTISPKLIVDLLCDKKTISFPGCMGQLFIDHFFGSAEVFLLVVMACDR YVAICKPLHYLTIMNRQVCFLLLVVAMIGGFVHSAFQIVVYSLPFCGPNVIDHFGCDMYP LLKVACTDTYFVGLTVVFNSGAICMVIFTLLLISCGVILNSLK\QEKRHKALSTCSSRI TVVALFFVPCIFIYVRPVSNFPTDKFMTVSYTIITHMLSPLIYTLRNXMRNAIEKLLGK KLTIFSNRSVRP Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI) | |
| 11 | 48,631,628 | 48,631,628 | SNP | A/C | rs71479924 (DbSNP) | |
| 11 | 48,631,771 | 48,631,770 | Ins(1) | -/C | rs34150981 (DbSNP) | |
| 11 | 48,631,837 | 48,631,837 | SNP | G/A | rs56102332 (DbSNP) | |
| 11 | 48,632,385 | 48,632,385 | SNP | C/T | rs73455216 (DbSNP) | |
| 11 | 48,632,475 | 48,632,475 | SNP | A/C | rs12419410 (DbSNP) | |
| 11 | 48,632,543 | 48,632,543 | SNP | C/T | rs61229351 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 48,303,671 | 48,863,606 | CopyNumber | Variation_3848 (DGV) |
| 11 | 48,346,202 | 48,972,502 | CopyNumber | Variation_9183 (DGV) |
| 11 | 48,365,757 | 49,068,634 | CopyNumber | Variation_2922 (DGV) |
| 11 | 48,479,497 | 48,689,328 | CopyNumber | Variation_5013 (DGV) |
| 11 | 48,631,515 | 48,634,548 | Deletion | #211 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.