OR4A44P Olfactory Receptor
| Gene Symbol | OR4A44P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.8.21P |
| External Ids | HGNC: 31263 GeneBank: NG_004415-NG_004417 |
| Build #39 labels | |
| Chromosomal location | 11:48,627,480-48,628,460 (+) |
| Cluster | 11@48 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A6P | 91.69% | 325 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A39 | 69% | 306 |
| Mouse | Or4a39 | 70% | 307 |
| Rat | Or4a77e | 66% | 306 |
| Cow | OR4A2 | 64% | 308 |
| Orang | OR4A47P | 59% | 305 |
| Horse | OR4A124 | 71% | 297 |
| Chimp | OR4A41P | 79% | 305 |
Sequence information
| Nucleotide sequence |
TTACAGGTCCTGTTCTCCTGAGCTCTCAACTGTGACAGAAGCCTTAGAGAAGAGTAAAGG GGACTGAGTAATAATATTACAGAATTTGTCCTCTTGGGCAACACTCAGTGTCCTGATGTG CAAAATGCATTATTTGTCATGGTTTTACTCACATACATTGTGAGTATGGCGGGAAACTTG CTCGCTGTGGTGGCTATTATTGCCAGCCCCTCCTTTGGCTCCCCAATGTACTTCTTCCTC ACTGCCCGTTATTTATGGATGTGGCATATTCCAATACCATTTCTTCCAAATTGATTATAG ACTTACTCCATGACAAAAAGACTATTTTCTTCACAGCATGCATGGGGCAGCTATTTATAG ACCACTTATTTGGTGGTGCTGAGGTCTTCCTACTTGTGGGGATGTCCTACGATTGCTATG TGGCCATCTCTAAGCCACTGCACTATTTGACCATCATGAATCAACAGGTTTGTATCCTTC TGTTGGTGGTGGCTGTGTCTGCAGGTTTTGTGAGCTGTGTGTTTCAAATTGTTGTTGTGT ACACTCTCTCATTCTGTGGCCCAATGTCACTGACCACTTTGTCTGTGACATGTACCCATT ACTGGAACTGGCGTGCACTGATACCTACTTTATAGGCCTCACTGTTGTTGCCAATGGTCT AGCAATCTGTATGGTCATCTTCACCTTTCTACTAATCTCCTATGGAGTAATCCTAAACAC CCTTAAAACTTATTGCCAGGAAGGGAGGTGTAAAGCCCTTTCTGCCTGCATCTCCTACAT TACAGTCACTGTCCTGTTTCTTGTTCCCTGTGTTTTCCTTTTTGTTAGACCTGTTTCAAA CGTTCCTATTGATAAATTCATGACTGTGTTTTATACAGTTATCACACACCCATGTTGAAT CCTTTAATATACACACTGAGAAATTTAGAGATGAGAATTGCTGTAAAAGCCAATGTAAAA AAACCCTGGCATAAAAACTTA |
| Conceptual translation |
LQVLFSXLNCDRSLREEXGLSNNITEFVLLGNTQCPDVQNALFVMVLLTYIVSMAGNL LAVVAIIASPSFGSPMYFFL/CPLFMDVAYSNTISSKLIIDLLHDKKTIFFTACMGQLF IDHLFGGAEVFLLVGMSYDCYVAISKPLHYLTIMNQQVCILLLVVAVSAGFVSCVFQIVV VYTLSFC/PNVTDHFVCDMYPLLELACTDTYFIGLTVVANGLAICMVIFTFLLISYGVI LNTLKTYCQEGRCKALSACISYITVTVLFLVPCVFLFVRPVSNVPIDKFMTVFYTVIT/ PMLNPLIYTLRNLEMRIAVKANVKKPWHKNL Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 48,649,141 | 48,649,141 | SNP | A/G | rs11820609 (DbSNP) | |
| 11 | 48,649,801 | 48,649,801 | SNP | A/T | rs11039887 (DbSNP) | |
| 11 | 48,649,316 | 48,649,316 | SNP | C/T | rs10742862 (DbSNP) | |
| 11 | 48,649,762 | 48,649,762 | SNP | C/T | rs11039886 (DbSNP) | |
| 11 | 48,649,409 | 48,649,409 | SNP | G/T | rs10838988 (DbSNP) | |
| 11 | 48,627,764 | 48,627,764 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 48,365,757 | 49,068,634 | CopyNumber | Variation_2922 (DGV) |
| 11 | 48,303,671 | 48,863,606 | CopyNumber | Variation_3848 (DGV) |
| 11 | 48,479,497 | 48,689,328 | CopyNumber | Variation_5013 (DGV) |
| 11 | 48,346,202 | 48,972,502 | CopyNumber | Variation_9183 (DGV) |
| 11 | 48,648,932 | 48,652,012 | Deletion | #212 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.