OR4A45P Olfactory Receptor
| Gene Symbol | OR4A45P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.8.18P |
| External Ids | HGNC: 31264 |
| Build #39 labels | |
| Chromosomal location | 11:48,579,436-48,580,351 (+) |
| Cluster | 11@48 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A11P | 83.22% | 304 |
| OR4A13P | 81.94% | 299 |
| OR4A40P | 81.91% | 304 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A39 | 74% | 297 |
| Mouse | Or4a39 | 75% | 300 |
| Rat | Or4a77e | 71% | 303 |
| Cow | OR4A2 | 69% | 300 |
| Orang | OR4A47P | 64% | 300 |
| Horse | OR4A124 | 75% | 303 |
| Chimp | OR4A40CP | 83% | 306 |
| Chimp | OR4A13P | 84% | 299 |
| Chimp | OR4A13 | 83% | 299 |
Sequence information
| Nucleotide sequence |
ATGAGACAAAATAACAGTATTACAGAATTTGTCTTCCTGGGCTTCTCTCAGGATCCTGAT GTGCAAAATGCATTATTTGTCATGTTTTTACTCACATACATTGTGTCAGTGGTGGGGAAC CTACTCATTGTCATGACTATTATTGCCAGCCCTTCCTTGGGCTCCCCAGTGTACTTCTTC CTCACCTGCCTGTCATTTATAGAGGCTGTGTATTCCACCACCATTTCTCCTGTATTGATT GTCGACTTCCTCTGTGATAAAAAGACTATTTCCTTCCGAGCTTGCATGGGCCAGCTGTTT ATAGACCACTTGTTTGGTGGTGCAGATCTTTCTTCTGGTGATGATGGCCTGGGATCGCTA CATGGCCATCTGTAAGCCACTGCACTATTTGACCATCATGAATCAACAGGTTTGCATCCT TCTGTTTGTGTTGGCCATGACTGGAGGTTTTGTGCATTCTGTGTTTCAAATTGTTGTTGT ATACTGTCTCCCTTTCTGTGGCCCGAATGCCATTGACCATTTTTACTGTGATATGTACCC ATTATTGGAACTGGCATGCACTGACACCTACTTTATAGGTCTCACTGTGGTTTTCAATGG TGGAGCAATCTGTATGGTCACCTTCACCCTTCTACTAATCTCATATAGGGTCATCCTAAA CTCCCTTAAAACTTACAGTCAGGAAAGGAGGCATAAAGCCCTGTCTACCTGCAGATCCCA CATTACCGTGGTTGTCCTGTTTTTTGTTCCCTGTATTTTCATGTATGTTAGACCTGTTTC AAACTTTTCTATTGATAAATTCCTCACTGTGTTTTATGCAGTTATCACACCCATGTTGAA TCCTTTTATATACGCGTTGAGAAATTCAGAGATGAGGACTGCTATAGAAAAACTCTTTGG TACAATGAGCTATAAT |
| Conceptual translation |
MRQNNSITEFVFLGFSQDPDVQNALFVMFLLTYIVSVVGNLLIVMTIIASPSLGSPVYFF LTCLSFIEAVYSTTISPVLIVDFLCDKKTISFRACMGQLFIDHLFGG\IFLLVMMAWDR YMAICKPLHYLTIMNQQVCILLFVLAMTGGFVHSVFQIVVVYCLPFCGPNAIDHFYCDMY PLLELACTDTYFIGLTVVFNGGAICMVTFTLLLISYRVILNSLKTYSQERRHKALSTCRS HITVVVLFFVPCIFMYVRPVSNFSIDKFLTVFYAVITPMLNPFIYALRNSEMRTAIEKLF GTMSYN Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI) | |
| 11 | 48,600,432 | 48,600,432 | large insertion | 29799bp insertion | rs72486186 (DbSNP) | |
| 11 | 48,600,857 | 48,600,857 | large insertion | 3426bp insertion | rs67661836 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| Deletion | 251 (Hasin) | |||
| 11 | 48,303,671 | 48,863,606 | CopyNumber | Variation_3848 (DGV) |
| 11 | 48,346,202 | 48,972,502 | CopyNumber | Variation_9183 (DGV) |
| 11 | 48,365,757 | 49,068,634 | CopyNumber | Variation_2922 (DGV) |
| 11 | 48,479,497 | 48,689,328 | CopyNumber | Variation_5013 (DGV) |
| 11 | 48,599,092 | 48,604,358 | CopyNumber | Variation_23021 (DGV) |
| 11 | 48,599,837 | 48,604,891 | CopyNumber | Variation_22552 (DGV) |
| 11 | 48,600,024 | 48,606,042 | CopyNumber | Variation_101214 (DGV) |
| 11 | 48,600,718 | 48,604,528 | CopyNumber | Variation_61137 (DGV) |
| 11 | 48,600,815 | 48,604,352 | CopyNumber | Variation_43536 (DGV) |
| 11 | 48,600,856 | 48,604,301 | CopyNumber | Variation_65939 (DGV) |
| 11 | 48,600,857 | 48,604,282 | CopyNumber | Variation_5628 (DGV) |
| 11 | 48,600,858 | 48,604,281 | CopyNumber | Variation_43820 (DGV) |
| 11 | 48,600,888 | 48,603,903 | Deletion | #6 (Waszak) |
| 11 | 48,600,961 | 48,604,097 | CopyNumber | Variation_85760 (DGV) |
| 11 | 48,601,601 | 48,604,097 | CopyNumber | Variation_75638 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.