OR4A46P Olfactory Receptor
| Gene Symbol | OR4A46P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.8.15P |
| External Ids | HGNC: 31265 |
| Build #39 labels | |
| Chromosomal location | 11:48,496,318-48,497,258 (+) |
| Cluster | 11@48 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A2P | 93.42% | 304 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A2 | 88% | 304 |
| Mouse | Or4a2 | 88% | 304 |
| Rat | Or4a2 | 88% | 304 |
| Cow | OR4A2 | 89% | 304 |
| Orang | OR4A47P | 67% | 302 |
| Horse | OR4A2P | 90% | 304 |
| Chimp | OR4A2 | 92% | 255 |
Sequence information
| Nucleotide sequence |
CTGGAATAAGGACATACAGAAAGACGTACGGAGCAAAGGAACAATGTGACTGAGTTTGTC CTTGTGGGGCTCACTCAGAGCCCCCAGGGACAGAAAATATTATTTGTTGTGTTCTTGCTC ATCTACATTGTGACAATGGTAGGCAACATATTCATTGTTGTGACTGTGGTGGTCAGCCCA ACTTTGGATGCCCCATGTACTTCTTCCTTGTCTACTTATCATTTATGGATGCTGTTCATT CTACTACAGTTACCCCAAATATGATTATATACTTACTCTATGAGAAGAAAACCATTTCGT TCCAAGCTTGCATGACCCAGCTTTTTATAGGACACCCATTTGGGGGTGCTGAGATTTTAC TCCTGGTTGTCATGGCCTATGAAGGCTACGTGGCCATCTGCAAACCCCTGCATTATTTGA CCATCATGAACCAACGGGTGTGCATTCTACTGCTGCTGTTGGCCTGGGCTGGAGGTTTCC TGCATGCTGTAGTTCAACTTCTTTTTGTTTACAACTTTCCCTTCTGTGGCCCCAATGTCA TTGAGCATTTCATCTGTGACATGTACCCTTTATTAAAACTTGCCTGCACTGACACCTACG TTATTGGCCTCACTGTGGTTGCCAATGATGGGGCAATCTGTGTGGTCATCTTTATGCTCT TACTCATCTCCTATAGGGTCATTCTGCACTCCCTGAAGAATCTTAGTGAGGAAGGGAGGC CCAAAGCCTTATCCACCTGTGGCTCCCACATCACTGGGGTGATCCTCTTCTTTGTCCCTT GTATTTTGATGTATGTGAGACCTCCTTCGACCTTACCCATTGATAAATCCTTGACTGTGT TTTACACTGTTATCACCCCTATGTTGAACCCTCTAATCTATACTTTAAGAAATGCAGAGA TGAAAAATGCTATGAAGAAGCTCTGGACCAGAAAAAGAAAA |
| Conceptual translation |
LEXHTERRTEQRNNVTEFVLVGLTQSPQGQKILFVVFLLIYIVTMVGNIFIVVTVVVSP T/GCPMYFFLVYLSFMDAVHSTTVTPNMIIYLLYEKKTISFQACMTQLFIGHPFGGAEI LLLVVMAYEGYVAICKPLHYLTIMNQRVCILLLLLAWAGGFLHAVVQLLFVYNFPFCGPN VIEHFICDMYPLLKLACTDTYVIGLTVVANDGAICVVIFMLLLISYRVILHSLKNLSEEG RPKALSTCGSHITGVILFFVPCILMYVRPPSTLPIDKSLTVFYTVITPMLNPLIYTLRNA EMKNAMKKLWTRKRK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI) | |
| 11 | 48,496,343 | 48,496,343 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 11 | 48,517,877 | 48,517,876 | Ins(1) | -/T | rs35477351 (DbSNP) | |
| 11 | 48,517,878 | 48,517,877 | Ins(1) | -/T | rs66718415 (DbSNP) | |
| 11 | 48,517,895 | 48,517,895 | SNP | A/G | rs11039779 (DbSNP) | |
| 11 | 48,518,126 | 48,518,125 | Ins(1) | -/C | rs35074257 (DbSNP) | |
| 11 | 48,518,159 | 48,518,159 | SNP | A/T | rs73466718 (DbSNP) | |
| 11 | 48,518,349 | 48,518,349 | SNP | C/T | rs7395360 (DbSNP) | |
| 11 | 48,518,677 | 48,518,677 | SNP | C/T | rs7395646 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 232 (Hasin) | |||
| 11 | 48,303,671 | 48,863,606 | CopyNumber | Variation_3848 (DGV) |
| 11 | 48,346,202 | 48,972,502 | CopyNumber | Variation_9183 (DGV) |
| 11 | 48,365,757 | 49,068,634 | CopyNumber | Variation_2922 (DGV) |
| 11 | 48,479,497 | 48,689,328 | CopyNumber | Variation_5013 (DGV) |
| 11 | 48,517,770 | 48,520,810 | Deletion | #207 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.