Search Olfactory receptors

(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR4A48P Olfactory Receptor

Gene Symbol OR4A48P1 (View this gene in GeneCards)
Family 4
Subfamily A
Pseudogene Yes
CORP pseudogene probability score
Aliases HsOR11.8.14P
External Ids HGNC: 31267   GeneBank: NG_004418   
Build #39 labels
Chromosomal location 11:48,491,721-48,492,494 (+)
Cluster 11@48
Synteny CLIC#26
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR4A18P 76.23% 223

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR4A47 63% 104
Mouse Or4c1 43% 145
Rat Or4c1 42% 143
Cow OR4A47WP 56% 108
Horse OR4A140P 52% 141
Chimp OR4AL1P 96% 110

Sequence information

Nucleotide sequence CTTTTTTCAAAACACCTTGTGCGTGCCTCCTGGCAGTTGGTGAACTTTCTGATGTATTCA
ACAGCATTGATCTCCACTTTGTCTCTGCATGTTCTCCTTTTATTTTAATTTTTACCATTT
TTTTCCCACATAAAAGGTCTTGCAGTCACTTAGAAATGCTGAGATAAATTGACTGGTATA
AAGTAAGGTATATGATTAACGAAATTTACACTAAAGCTAATTGGCCTTTTCATGGACTAT
AAGACTATGCACAACCACTCCGTACTCAAACATGCATTTCTCTCTCAAATGTTGTATGAC
CCAGTACCCAGCTCTTCACAGCACACTTTTTTCTTGGTGGATCTCAGGTGTTCCTTCTGT
TGGTGATGGCCTAGACCACTTATAGGGCCATCTGAAAGTCCTTGCAGTATTTGGTTGTCA
TGAAGCAATGGCTGTGTGTTGTGCTGCTGGTTGTGCTCTGGGCTGGAGGATTTTTGCACA
CAGTAATACAACTTGACCTTATTCATGGGCTCCCATCTTATGACCCCAATGTCATTGGTC
ATTTTGTCTGTAACATGGACCCCTTAATGAAGCTTGTCTGTGACTATACACTCAACAGAT
TTGCCTATTTTGCAGGTCATGATTTAAATACTAGGTTTTATATATTTCATTTACATTCAG
ACTGGACTGTTTCCTTTTGGTGATTTGACTTTGTTATTCTTTTGTAATTTTTTCCCTAGA
GGACATGGTTCTATAAATCTTGTTATACATAGTTATTATCCCTGTGGCGTCTCT
Conceptual translation LFSKHLVRASWQLVNFLMYSTALISTLSLHVL\YFNFYHFFPTXVLQSLRNAEINXV
XKVYDXNLHXXAFSWTIRL\QPLRTQTCISLSNVVXSTQLFTAHFFLGGSQVFL
LLVMAXTYRAIXSLQYLVVMKQWLCVVLLVVLWAGGFLHTVIQLDLIHGLPSYDPNVI
GHFVCNMDPLMKLVCDYTLNRFAYFAGHDLNT/VLYISFTFRLDCFLLVIXCYSFVIF
SLE/HGSINLVIHSYYPCGVS

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 100 -100 SNP C/T 1000GP (YRI, YRI, YRI, YRI, YRI)
11 48,491,721 48,491,721 SNP C/T 1000GP (CEU, CHBJPT)
11 48,492,255 48,492,255 SNP T/C 1000GP (CEU)
11 48,492,340 48,492,340 SNP T/A 1000GP (CEU, CHBJPT)
11 48,492,379 48,492,379 SNP A/G 1000GP (CEU, CHBJPT)
11 48,492,407 48,492,407 SNP G/C 1000GP (CEU, CHBJPT)
11 48,513,294 48,513,294 SNP C/T rs11823603 (DbSNP)
11 48,513,769 48,513,769 SNP C/A rs72482367 (DbSNP)
11 48,513,892 48,513,892 SNP A/T rs11039772 (DbSNP)
11 48,513,931 48,513,931 SNP A/G rs11039773 (DbSNP)
11 48,513,959 48,513,959 SNP C/G rs11039774 (DbSNP)

Variations - CNVs

Chr Start End Type Sources
CopyNumber 35 (Hasin)
11 48,303,671 48,863,606 CopyNumber Variation_3848 (DGV)
11 48,346,202 48,972,502 CopyNumber Variation_9183 (DGV)
11 48,365,757 49,068,634 CopyNumber Variation_2922 (DGV)
11 48,479,497 48,689,328 CopyNumber Variation_5013 (DGV)
11 48,513,173 48,516,046 Deletion #206 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.