OR4A49P Olfactory Receptor
| Gene Symbol | OR4A49P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | |
| External Ids | HGNC: 31268 GeneBank: NG_004419 |
| Build #39 labels | |
| Chromosomal location | 11:49,915,112-49,915,543 (-) |
| Cluster | 11@50 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A2P | 63.64% | 99 |
| OR4A46P | 85.07% | 67 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Rat | Or4a77e | 45% | 143 |
Sequence information
| Nucleotide sequence |
ATGACAGAGTTTGTCCTTGTGGGGCTCACTCAGAGCCCCCAGGGACAGAAAATATTATTT GTTGTGTTCTTGCTCATCTACCTTGTGACAATGGTAGGTGACATACTCATTGTTGTAACT GTGGTGGTCAGCCCAACTTTGGATGCCCCTATGTACTTCTTCCTTGGGTACTTATCATTA ATGGATGCTGTTTAGTCCTCAGGTGAAGCAGCTTGTTTTGGTTCCATATTTATATAAAAA TGATCCATTGATCTTCCCAGATGTTTAGAATATCTGATAATACCTCTGCTATTTTCAATA CCCCCTTCTCATGGCCTTCTAAAAAACAGCCAGGCTCTGCTTTTTATATGTAAAATCAGC ATAATCCATAATCTATGAACTTCAAATATGCAATGCAGAGCCTGATAGCAAATATTTTGG AATACACCACTG |
| Conceptual translation |
MTEFVLVGLTQSPQGQKILFVVFLLIYLVTMVGDILIVVTVVVSPTLDAPMYFFLGYLSL MDAVXSG-EAACFGSIFIXXIDLPRCLEYLIIPLLFSIPPSHGLLKNSQALLFICKI SIIHNLXSNMQCRAXQIFW Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI) | |
| 11 | 49,915,114 | 49,915,114 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 49,915,501 | 49,915,501 | SNP | T/C | 1000GP (CEU) | |
| 11 | 49,936,666 | 49,936,666 | SNP | G/A | rs4474434 (DbSNP) | |
| 11 | 49,936,687 | 49,936,687 | SNP | G/A | rs4991008 (DbSNP) | |
| 11 | 49,936,716 | 49,936,716 | SNP | C/G | rs4991009 (DbSNP) | |
| 11 | 49,936,739 | 49,936,739 | SNP | G/A | rs4991010 (DbSNP) | |
| 11 | 49,936,751 | 49,936,751 | SNP | G/A | rs4991011 (DbSNP) | |
| 11 | 49,937,053 | 49,937,053 | SNP | C/T | rs4881657 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 49,732,291 | 50,117,547 | CopyNumber | Variation_6919 (DGV) |
| 11 | 49,934,664 | 49,937,195 | Deletion | #213 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.