OR4A6P Olfactory Receptor
| Gene Symbol | OR4A6P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | A |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-108, HsOR11.10.1P, ORL3584 |
| External Ids | HGNC: 15163 GeneBank: BK004781, NG_004329 ORDB: ORL3584 |
| Build #39 labels | OR4A6P |
| Chromosomal location | 11:54,724,847-54,725,816 (-) |
| Cluster | 11@51 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4A44P | 91.69% | 325 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4A39 | 69% | 301 |
| Mouse | Or4a39 | 71% | 303 |
| Rat | Or4a81 | 68% | 303 |
| Cow | OR4A2 | 64% | 307 |
| Orang | OR4A47P | 61% | 301 |
| Horse | OR4A124 | 70% | 303 |
| Chimp | OR4A44P | 92% | 305 |
Sequence information
| Nucleotide sequence |
TTACAGGTCCTGTTCTCCTGAGCTCTCAACTGTGACAGAAGCCTTAGAGAAGAGTAAAGG GGACTGAGTAATAATGTTACAGAATTTGTCCTCTTGGGCAACACTCAGTGTCCTGATGTG CAAAATGCATTATTTGTCATGGTTTTACTCACATACGTTGTGAGTATGGCGGGAAACTTG CTTGCTGTGGTGGCTATTATTTCCAGCCCTTCCTTTGGCTCCCCAATGTACTTCTTCCTC ACAGCCTGTTATTTATATATGCTGCATATTCCAATACCATTTCTCCCAAATTGATTATAG GCTTACTCCATGATAAAAAGACTATTTTCTTCACAGCATGCATGGGGCAGCTATTTATAG ACCACTTATTTGGTGGTGCTGAGGTCTTCCTACTTGTGGGGATGTCCTACGATTTCTATG TGGCCATCTCTAAGCCACTGCACTATTTGACCATCATGAATCAACAGGTTTGTATCCTTC TGTTGGTGGTGGCTGTGACTGGAGGTTTTGTGAGTTGTGTGTTTCAAATTGTTGTTGTGT ACACTCTCTCGTTCTGTGGCCAAATGTCACTGACCACTTTGTCTGTGACATGTACCCATT ATTGGAACTGGTTTGCACTGATACCTACTTTATAGGTCTCACTGTTGTTGCCAATGGTCT AGCAATCTGTATGGTCGTCTTCACCCTTCTACTAATCTCCTATGGAGTCATCCTAAACAA CTTTAAAACTTATAGTCAGGAAGGGAGGCTTAAAGCCCTGTCTGCCTGCATCTCCTACAT AACAGTCACTGTCCTGTTTCTTGTTCCCTGTATTTTCCTTTTCGTTAGACCTGTTTCGAA CTTTCCTATTGATAAATTCATGACTGTGTTTTATACAGTTATCATACACATGTTGAATCC ATTAATATACACACTGAGAAATTTAGAGATGAGAATTGCTGTAAAATCCAATGTAAAAAA ACTCTGGCAT |
| Conceptual translation |
LQVLFSXLNCDRSLREEXGLSNNVTEFVLLGNTQCPDVQNALFVMVLLTYVVSMAGNL LAVVAIISSPSFGSPMYFFLT/LLFIYAAYSNTISPKLIIGLLHDKKTIFFTACMGQLF IDHLFGGAEVFLLVGMSYDFYVAISKPLHYLTIMNQQVCILLLVVAVTGGFVSCVFQIVV VYTLSFC/PNVTDHFVCDMYPLLELVCTDTYFIGLTVVANGLAICMVVFTLLLISYGVI LNNFKTYSQEGRLKALSACISYITVTVLFLVPCIFLFVRPVSNFPIDKFMTVFYTVIIHM LNPLIYTLRNLEMRIAVKSNVKKLWH Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 51,394,275 | 51,394,275 | SNP | A/G | rs572196 (DbSNP) | |
| 11 | 51,393,840 | 51,393,840 | SNP | A/G | rs12422078 (DbSNP) | |
| 11 | 51,394,003 | 51,394,003 | SNP | A/G | rs12576977 (DbSNP) | |
| 11 | 51,394,223 | 51,394,223 | SNP | A/G | rs572049 (DbSNP) | |
| 11 | 51,393,820 | 51,393,820 | SNP | C/A | rs499232 (DbSNP) | |
| 11 | 51,394,262 | 51,394,262 | SNP | C/T | rs73465443 (DbSNP) | |
| 11 | 51,394,148 | 51,394,148 | SNP | G/A | rs72480356 (DbSNP) | |
| 11 | 51,393,718 | 51,393,718 | SNP | G/T | rs11246539 (DbSNP) | |
| 11 | 51,393,529 | 51,393,529 | SNP | T/G | rs1498429 (DbSNP) | |
| 11 | 51,394,403 | 51,394,403 | SNP | T/G | rs549117 (DbSNP) | |
| 11 | 54,725,459 | 54,725,459 | SNP | A/C | 1000GP (CEU) | |
| 11 | 54,725,396 | 54,725,396 | SNP | G/A | 1000GP (CEU) | |
| 11 | 54,725,004 | 54,725,004 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 11 | 54,725,003 | 54,725,003 | SNP | C/T | 1000GP (CEU) | |
| 11 | 54,725,654 | 54,725,654 | SNP | G/A | 1000GP (CHBJPT) | |
| 11 | 54,725,561 | 54,725,561 | SNP | T/G | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 51,192,824 | 51,563,636 | CopyNumber | Variation_8689 (DGV) |
| 11 | 51,228,146 | 51,525,878 | CopyNumber | Variation_48823 (DGV) |
| 11 | 51,372,036 | 51,529,002 | CopyNumber | Variation_53111 (DGV) |
| 11 | 51,391,463 | 51,394,532 | Deletion | #214 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.