OR4C13 Olfactory Receptor
| Gene Symbol | OR4C131 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | C |
| Pseudogene | No |
| CORP pseudogene probability score | 1 (pseudogene) |
| Aliases | OR11-260, HsOR11.9.4, ORL3336 |
| External Ids | HGNC: 15169 GeneBank: AB065750, AF399575, BK004414, NM_001001955 ORDB: ORL3336 |
| Build #39 labels | OR4C13 |
| Chromosomal location | 11:49,952,423-49,953,349 (+) |
| Cluster | 11@50 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4C7P | 90.94% | 309 |
| OR4C9P | 90.16% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4C10 | 82% | 309 |
| Mouse | Or4c10 | 83% | 303 |
| Rat | Or4c10b | 80% | 309 |
| Cow | OR4C10G | 81% | 308 |
| Cow | OR4C10 | 81% | 303 |
| Orang | OR4C9P | 88% | 309 |
| Horse | OR4C10 | 80% | 307 |
| Chimp | OR4C9P | 92% | 309 |
| Chimp | OR4C7P | 89% | 309 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC137005 |
| GNF Atlas2 | gnf1h02094_s_at |
Sequence information
| Nucleotide sequence |
ATGGCGAATAGAAACAATGTGACAGAGTTTATTCTATTGGGGCTTACAGAGAATCCAAAA ATGCAGAAAATCATATTTGTTGTGTTTTCTGTCATCTACATCAACGCCATGATAGGAAAT GTGCTCATTGTGGTCACCATCACTGCCAGCCCATCACTGAGATCCCCCATGTACTTTTTC CTGGCCTATCTCTCCTTTATTGATGCCTGCTATTCCTCTGTCAATACCCCTAAGCTGATC ACAGATTCACTCTATGAAAACAAGACTATCTTATTCAATGGATGTATGACTCAAGTCTTT GGAGAACATTTTTTCAGAGGTGTTGAGGTCATCCTACTTACTGTAATGGCCTATGACCAC TATGTGGCCATCTGCAAGCCCTTGCACTATACCACCATCATGAAGCAGCATGTTTGTAGC CTGCTAGTGGGAGTGTCATGGGTAGGAGGCTTTCTTCATGCAACCATACAGATCCTCTTC ATCTGTCAATTACCTTTCTGTGGTCCTAATGTCATAGATCACTTTATGTGTGATCTCTAC ACTTTGATCAATCTTGCCTGCACTAATACCCACACTCTAGGACTCTTCATTGCTGCCAAC AGTGGGTTCATATGCCTGTTAAACTGTCTCTTGCTCCTGGTCTCCTGCGTGGTCATACTG TACTCCTTAAAGACCCACAGCTTAGAGGCAAGGCACGAAGCCCTCTCTACCTGTGTCTCC CACATCACAGTTGTCATCTTATCCTTTATACCCTGCATATTTGTGTACATGAGACCTCCA GCTACTTTACCCATTGATAAAGCAGTTGCTGTATTCTACACTATGATAACTTCTATGTTA AACCCCTTAATCTACACCTTGAGGAATGCTCAAATGAAAAATGCCATTAGGAAATTGTGT AGTAGGAAAGCTATTTCAAGTGTCAAA |
| Conceptual translation |
MANRNNVTEFILLGLTENPKMQKIIFVVFSVIYINAMIGNVLIVVTITASPSLRSPMYFF LAYLSFIDACYSSVNTPKLITDSLYENKTILFNGCMTQVFGEHFFRGVEVILLTVMAYDH YVAICKPLHYTTIMKQHVCSLLVGVSWVGGFLHATIQILFICQLPFCGPNVIDHFMCDLY TLINLACTNTHTLGLFIAANSGFICLLNCLLLLVSCVVILYSLKTHSLEARHEALSTCVS HITVVILSFIPCIFVYMRPPATLPIDKAVAVFYTMITSMLNPLIYTLRNAQMKNAIRKLC SRKAISSVK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SYN | C/T | H/H | 1000GP (YRI) |
| 11 | 49,952,427 | 49,952,427 | NS | C/T | A/V | 1000GP (CEU, CHBJPT) |
| 11 | 49,953,097 | 49,953,097 | SYN | C/T | T/T | 1000GP (CEU) |
| 11 | 49,953,118 | 49,953,118 | SYN | C/T | H/H | 1000GP (CEU, CHBJPT) |
| 11 | 49,953,123 | 49,953,123 | NS | C/T | A/V | 1000GP (CEU) |
| 11 | 49,973,979 | 49,973,979 | NS | C/T | A/V | rs28378220 (DbSNP) |
| 11 | 49,974,371 | 49,974,371 | NS | A/G | I/V | rs28662375 (DbSNP) |
| 11 | 49,974,400 | 49,974,400 | SYN | A/T | L/L | rs4268488 (DbSNP) |
| 11 | 49,974,670 | 49,974,670 | SYN | C/T | H/H | rs16914589 (DbSNP) |
| 11 | 49,974,822 | 49,974,821 | Ins(2) | -/CT | rs71973814 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 49,732,291 | 50,117,547 | CopyNumber | Variation_6919 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| A2V | V133I | C167R | L185V | A234V | % Freq | CORP | |
|---|---|---|---|---|---|---|---|
| 1 | A | I | C | L | A | 91.01 | 1.000 |
| 2 | V | I | C | L | A | 7.68 | 1.000 |
| 3 | A | I | R | L | A | 0.84 | 1.000 |
| 4 | V | V | C | L | A | 0.15 | 1.000 |
| 5 | A | I | C | V | A | 0.15 | 1.000 |
| 6 | A | I | C | L | V | 0.08 | 1.000 |
| 7 | A | V | C | L | A | 0.08 | 1.000 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR4C13.aApr07-unspliced | main_exon | CDS | chr11 | 49,952,423 | 49,953,349 | + |
| 3UTR | chr11 | 49,953,349 | 49,953,352 | + | ||