OR4C46 Olfactory Receptor
Gene Symbol | OR4C461 (View this gene in GeneCards) |
Family | 4 |
Subfamily | C |
Pseudogene | No |
CORP pseudogene probability score | 1 (pseudogene) |
Aliases | HsOR11.10.8 |
External Ids | HGNC: 31271 GeneBank: NM_001004703 |
Build #39 labels | |
Chromosomal location | 11:54,603,071-54,603,997 (+) |
Cluster | 11@51 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR4C10P | 94.82% | 309 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR4C10 | 86% | 309 |
Dog | OR4C10C | 85% | 309 |
Mouse | Or4c10 | 85% | 304 |
Rat | Or4c105 | 79% | 309 |
Cow | OR4C10G | 83% | 307 |
Cow | OR4C10 | 83% | 305 |
Orang | OR4C9P | 83% | 309 |
Horse | OR4C10 | 82% | 308 |
Chimp | OR4C10P | 94% | 309 |
Chimp | OR4C46P | 93% | 307 |
Sequence information
Nucleotide sequence |
ATGGAGAATAGGAATAACATGACAGAGTTTGTTTTGCTGGGGCTTACAGAGAATCCAAAG ATGCAGAAAATCATATTTGTTGTGTTTTTTGTCATCTATATCATCACTGTGGTGGGATAT GTGCTCATTGTGGTCACCATCACTGCCAGCCCATCACTGGGGTCCCCCATGTACCTTTCC CTGGCCTATCTCTCCTTTATTGATGCCTGCTATTCCTCTGTCAATACCCCTAACCTGATC ACACATTCACTCTATGGAAAGAAGGCCATCCTATTCAATGGATGCATGACTCAAGTCTTT GGAGAACATTTCTTCGGAGGTGCAGAGGGCATCCTACTTACTGTGATGGCCTATGACCAC TATGTGGCCATCTGCAAGCCCTTGCACTATATGACTATCATGAACCAGTGTGTGTGTGCC CTGCTAATGGGAGTGGTGTGGATGGGAGGCTTTCTTCATGCAACCATACAGATCCTCTTC ATCTTCCAATTACCTTTCTGTGGTCCTAATGTCATAGATCACTTTATGTGTGATCTGAAC CCTTTGCTCAACCTCGCCTGCACTGACACCCATATGCTGGAACTCTTCATTGCTGCCAAC AGTGGATTCATCTGCTTGTTAAACTTTGCCCTCCTGCTGGTCTCCTATGTGGTCATCTTG TGCTCCCTAAGGACTCATAGCTTGGAGGCAAGGCACAAAGCCCTCTCCACCTGTGTCTCC CACATCACGGTTGTCATCTTATTCTTTGTGCCCTGCATATTTGTGTACATGAGACCTGCA GCTACTTTACCTATTGATAAAGCAGTTGCTATATTCTACACTATGATAACTCCTATGTTA AACCCCTTAATCTATACCTTGAAGAATGCCCAGATGAAAAATGCCATCAGGAAATTGTGT AGTAGAAAGGACATTTCAGGTGACAAA |
Conceptual translation |
MENRNNMTEFVLLGLTENPKMQKIIFVVFFVIYIITVVGYVLIVVTITASPSLGSPMYLS LAYLSFIDACYSSVNTPNLITHSLYGKKAILFNGCMTQVFGEHFFGGAEGILLTVMAYDH YVAICKPLHYMTIMNQCVCALLMGVVWMGGFLHATIQILFIFQLPFCGPNVIDHFMCDLN PLLNLACTDTHMLELFIAANSGFICLLNFALLLVSYVVILCSLRTHSLEARHKALSTCVS HITVVILFFVPCIFVYMRPAATLPIDKAVAIFYTMITPMLNPLIYTLKNAQMKNAIRKLC SRKDISGDK Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 51,515,834 | 51,515,834 | NS | A/C | I/L | rs61890422 (DbSNP) |
11 | 51,516,144 | 51,516,144 | NS | A/G | K/R | rs11246609 (DbSNP) |
11 | 51,516,036 | 51,516,036 | NS | A/G | Y/C | rs11246608 (DbSNP) |
11 | 51,515,546 | 51,515,546 | NS | A/G | T/A | rs61890419 (DbSNP) |
11 | 51,515,460 | 51,515,460 | NS | C/T | S/F | rs11246606 (DbSNP) |
11 | 51,516,000 | 51,516,000 | NS | C/T | S/F | rs11246607 (DbSNP) |
11 | 51,515,830 | 51,515,830 | SYN | C/G | L/L | rs61890421 (DbSNP) |
11 | 51,515,596 | 51,515,596 | SYN | C/T | F/F | rs61890420 (DbSNP) |
11 | 54,603,367 | 54,603,367 | NS | C/T | L/F | 1000GP (CEU, CHBJPT) |
11 | 54,603,819 | 54,603,819 | NS | C/T | S/F | 1000GP (CEU) |
11 | 54,603,135 | 54,603,135 | NS | A/G | K/R | 1000GP (CEU) |
11 | 54,603,325 | 54,603,325 | NS | A/T | T/S | 1000GP (CEU) |
11 | 100 | -100 | NS | C/T | S/F | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 51,192,824 | 51,563,636 | CopyNumber | Variation_8689 (DGV) |
11 | 51,228,146 | 51,525,878 | CopyNumber | Variation_48823 (DGV) |
11 | 51,372,036 | 51,529,002 | CopyNumber | Variation_53111 (DGV) |
11 | 51,515,182 | 51,518,208 | Deletion | #274 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
S60F | A89T | A108V | H120R | A199T | L211F | T225S | A234V | L235H | C238R | S240F | D304N | % Freq | CORP | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | S | A | A | H | A | L | T | A | L | C | F | D | 44.85 | 1.000 |
2 | S | A | A | H | A | L | T | A | L | C | S | D | 32.87 | 1.000 |
3 | F | A | A | R | A | F | T | A | L | C | S | D | 12.44 | 1.000 |
4 | F | T | A | H | A | L | T | A | L | C | S | D | 3.53 | 1.000 |
5 | S | A | A | H | A | L | T | A | L | R | S | D | 1.15 | 1.000 |
6 | F | A | A | H | A | F | T | A | L | C | S | D | 1.08 | 1.000 |
7 | S | A | A | R | A | F | T | A | L | C | S | D | 0.92 | 1.000 |
8 | F | A | A | R | A | F | T | V | L | C | S | D | 0.77 | 1.000 |
9 | S | A | A | H | A | L | T | A | L | C | F | N | 0.54 | 1.000 |
10 | S | T | A | H | A | L | T | A | L | C | S | D | 0.31 | 1.000 |
11 | S | A | V | H | A | L | T | A | L | C | F | D | 0.23 | 1.000 |
12 | S | A | A | H | A | L | S | A | L | C | F | D | 0.23 | 1.000 |
13 | S | A | A | H | A | L | T | A | H | C | S | D | 0.15 | 1.000 |
14 | F | A | A | H | A | L | T | A | L | C | S | D | 0.15 | 1.000 |
15 | S | A | A | R | A | L | T | A | L | C | S | D | 0.15 | 1.000 |
16 | F | T | A | H | A | L | T | A | H | C | S | D | 0.15 | 1.000 |
17 | S | A | A | H | A | L | T | A | L | R | F | D | 0.08 | 1.000 |
18 | S | A | A | H | T | L | T | A | L | C | F | D | 0.08 | 1.000 |
19 | S | A | A | H | A | F | T | A | L | C | S | D | 0.08 | 1.000 |
20 | S | A | A | R | A | L | T | A | L | C | F | D | 0.08 | 1.000 |
21 | S | A | A | H | A | L | T | A | H | C | F | D | 0.08 | 1.000 |
22 | S | T | A | H | A | L | T | A | L | C | F | D | 0.08 | 1.000 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR4C46.aApr07-unspliced | main_exon | 3UTR | chr11 | 54,603,068 | 54,603,071 | + |
CDS | chr11 | 54,603,071 | 54,603,997 | + |