OR4C50P Olfactory Receptor
| Gene Symbol | OR4C50P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | C |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR11.10.9P |
| External Ids | HGNC: 31274 GeneBank: NG_004295 |
| Build #39 labels | |
| Chromosomal location | 11:54,591,479-54,592,405 (-) |
| Cluster | 11@51 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4C12 | 86.08% | 309 |
| OR4C2P | 90.29% | 309 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4C12 | 84% | 309 |
| Dog | OR4C12C | 82% | 309 |
| Mouse | Or4c12 | 81% | 309 |
| Mouse | Or4c12b | 81% | 304 |
| Rat | Or4c12 | 81% | 303 |
| Cow | OR4C12 | 81% | 309 |
| Cow | OR4C12DP | 80% | 276 |
| Orang | OR4C9P | 64% | 307 |
| Horse | OR4C2 | 79% | 304 |
| Chimp | OR4C2P | 91% | 308 |
Sequence information
| Nucleotide sequence |
ATGAAGAATAAAAGGAATGTGACTGAATTCATTTTAACAGGTCTTACACAGAACCCTAAA ATGGAGAAAATCATGTTTGCAGTATTTTTGGTTCCTTACATGATAACACTTTCAGGCAAC CTGCTCATTGTGGTTACAATTACCACCAGCCAGGCTCTGATCTCCCCCATGTACTTCTTC CTGACCCACCTTTCTTTGATAGACACAGTTTATTCTTCTTCTTCAGCTCCTAAGTTGATT GCCGATTCCCTTCATGAGAAGAAAATCATCTCCTTTAATGGGTGTATGGCTCAAGCCTAT GCAGAACACATTTTTGGTGCTACTGAGATCATCCTGCTGACAGTGATGGCCTGTGACCAC AATGTGGCCATCTGCAAACCTCTGCACTACACAACCATCATGAGCCAAAGCCTGTGCATT CTCCTAGCGGTAGTGGCCTGGATGGGAGGATTTCTCCATGCAACTATTCAGATTCTCTTT ACAGTATGGCTGCCCTTCTGTGGCCCCAATGTAATAGACCACTTCATGTGTGACTTGTAC CCTTTGTTAAAACTTGTTTGCCTGGACACTCACACCCTTGGTTTCTTTGTTGCTGCCAAC AGTGGGTTCATCTGCCTATTAAACTTCCTTCTCTAGATGGTATCCTGTGTGATCATCTTG AGATCTTTAAAGAACTATAGCTTGGAGGGGAAGGGTAAAGCCCTCTCCACCTGTATTTCT CACATCATAGTAATTGTCTTATTCTTTGTGCCCTGTATATTTGTGTATCTGTGCCCAGTG ACCACTCTGCACATTGAAAAAGCTGCTGCTGTATTTTATACTATGGTGGTCCCAATGTTA AATCCTTTGATCTACACACTCAGAAATGCTGAGTTAAAAAGTGTGATAAGGAAGCTTTGG AGAAAAAAAGTGATTTCAGATAATAAT |
| Conceptual translation |
MKNKRNVTEFILTGLTQNPKMEKIMFAVFLVPYMITLSGNLLIVVTITTSQALISPMYFF LTHLSLIDTVYSSSSAPKLIADSLHEKKIISFNGCMAQAYAEHIFGATEIILLTVMACDH NVAICKPLHYTTIMSQSLCILLAVVAWMGGFLHATIQILFTVWLPFCGPNVIDHFMCDLY PLLKLVCLDTHTLGFFVAANSGFICLLNFLLXVSCVIILRSLKNYSLEGKGKALSTCIS HIIVIVLFFVPCIFVYLCPVTTLHIEKAAAVFYTMVVPMLNPLIYTLRNAELKSVIRKLW RKKVISDNN Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 51,527,526 | 51,527,525 | Ins(1) | -/A | rs72056292 (DbSNP) | |
| 11 | 51,526,957 | 51,526,957 | SNP | A/G | rs11246617 (DbSNP) | |
| 11 | 51,527,218 | 51,527,218 | SNP | A/G | rs11246618 (DbSNP) | |
| 11 | 51,527,239 | 51,527,239 | SNP | A/G | rs12421819 (DbSNP) | |
| 11 | 51,527,345 | 51,527,345 | SNP | A/G | rs56219368 (DbSNP) | |
| 11 | 51,527,281 | 51,527,281 | SNP | C/G | rs11607644 (DbSNP) | |
| 11 | 51,527,387 | 51,527,387 | SNP | C/G | rs55899978 (DbSNP) | |
| 11 | 51,527,111 | 51,527,111 | SNP | C/T | rs61004621 (DbSNP) | |
| 11 | 51,527,695 | 51,527,695 | SNP | C/T | rs56244707 (DbSNP) | |
| 11 | 51,527,010 | 51,527,010 | SNP | G/T | rs10902366 (DbSNP) | |
| 11 | 51,527,482 | 51,527,482 | SNP | T/C | rs35049610 (DbSNP) | |
| 11 | 54,592,368 | 54,592,368 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 11 | 54,592,269 | 54,592,269 | SNP | T/G | 1000GP (CEU, CHBJPT) | |
| 11 | 54,592,168 | 54,592,168 | SNP | C/T | 1000GP (CEU) | |
| 11 | 54,592,061 | 54,592,061 | SNP | A/G | 1000GP (CEU) | |
| 11 | 54,592,040 | 54,592,040 | SNP | G/A | 1000GP (CEU) | |
| 11 | 54,591,998 | 54,591,998 | SNP | G/C | 1000GP (CEU, CHBJPT) | |
| 11 | 54,591,934 | 54,591,934 | SNP | G/A | 1000GP (CEU) | |
| 11 | 54,591,892 | 54,591,892 | SNP | C/G | 1000GP (CEU) | |
| 11 | 54,591,642 | 54,591,642 | SNP | G/A | 1000GP (CEU) | |
| 11 | 54,591,584 | 54,591,584 | SNP | T/C | 1000GP (CEU) | |
| 11 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 51,192,824 | 51,563,636 | CopyNumber | Variation_8689 (DGV) |
| 11 | 51,372,036 | 51,529,002 | CopyNumber | Variation_53111 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.