OR4D10 Olfactory Receptor
| Gene Symbol | OR4D101 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | D |
| Pseudogene | No |
| CORP pseudogene probability score | 0.52 (pseudogene) |
| Aliases | OR11-251, HsOR11.13.8 |
| External Ids | HGNC: 15173 GeneBank: AB065808, AF399442, AF546476-AF546489, BK004311, NM_001004705 |
| Build #39 labels | OR4D10P |
| Chromosomal location | 11:59,477,430-59,478,362 (+) |
| Cluster | 11@59a |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4D8P | 91.72% | 302 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4D9C | 89% | 311 |
| Mouse | Or4d10 | 88% | 306 |
| Mouse | Or4d10c | 86% | 309 |
| Mouse | Or4d10b | 86% | 304 |
| Rat | Or4d10 | 86% | 308 |
| Rat | Or4d10c | 86% | 309 |
| Cow | OR4D11B | 83% | 311 |
| Orang | OR4D10E | 94% | 311 |
| Orang | OR4D10F | 95% | 305 |
| Orang | OR4D10DP | 95% | 303 |
| Horse | OR4D9E | 87% | 310 |
| Horse | OR4D9F | 86% | 311 |
| Horse | OR4D9G | 85% | 310 |
| Horse | OR4D9H | 85% | 310 |
| Chimp | OR4D8 | 92% | 302 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC136894 |
| GNF Atlas2 | gnf1h02109_s_at |
Sequence information
| Nucleotide sequence |
ATGGAGATGGAAAACTGCACCAGGGTAAAAGAATTTATTTTCCTTGGCCTGACCCAGAAT CGGGAAGTGAGCTTAGTCTTATTTCTTTTCCTACTCTTGGTGTATGTGACAACTTTGCTG GGAAACCTCCTCATCATGGTCACTGTTACCTGTGAATCTCGCCTTCACACGCCCATGTAT TTTTTGCTCCATAATTTATCTATTGCCGATATCTGCTTCTCTTCCATCACAGTGCCCAAG GTTCTGGTGGACCTTCTGTCTGAAAGAAAGACCATCTCCTTCAATCATTGCTTCACTCAG ATGTTTCTATTCCACCTTATTGGAGGGGTGGATGTATTTTCTCTTTCGGTGATGGCATTG GATCGATATGTGGCCATCTCCAAGCCCCTGCACTATGCGACTATCATGAGTAGAGACCAT TGCATTGGGCTCACAGTGGCTGCCTGGTTGGGGGGCTTTGTCCACTCCATCGTGCAGATT TCCCTGTTGCTCCCACTCCCTTTCTGCGGACCCAATGTTCTTGACACTTTCTACTGTGAT GTCCACCGGGTCCTCAAACTGGCCCATACAGACATTTTCATACTTGAACTACTAATGATT TCCAACAATGGACTGCTCACCACACTGTGGTTTTTCCTGCTCCTGGTGTCCTACATAGTC ATATTATCATTACCCAAGTCTCAGGCAGGAGAGGGCAGGAGGAAAGCCATCTCCACCTGC ACCTCCCACATCACTGTGGTGACCCTGCATTTCGTGCCCTGCATCTATGTCTATGCCCGG CCCTTCACTGCCCTCCCCATGGATAAGGCCATCTCTGTCACCTTCACTGTCATCTCCCCT CTGCTCAACCCCTTGATCTACACTCTGAGGAACCATGAGATGAAGTCAGCCATGAGGAGA CTGAAGAGAAGACTTGTGCCTTCTGATAGAAAA |
| Conceptual translation |
MEMENCTRVKEFIFLGLTQNREVSLVLFLFLLLVYVTTLLGNLLIMVTVTCESRLHTPMY FLLHNLSIADICFSSITVPKVLVDLLSERKTISFNHCFTQMFLFHLIGGVDVFSLSVMAL DRYVAISKPLHYATIMSRDHCIGLTVAAWLGGFVHSIVQISLLLPLPFCGPNVLDTFYCD VHRVLKLAHTDIFILELLMISNNGLLTTLWFFLLLVSYIVILSLPKSQAGEGRRKAISTC TSHITVVTLHFVPCIYVYARPFTALPMDKAISVTFTVISPLLNPLIYTLRNHEMKSAMRR LKRRLVPSDRK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 59,245,709 | 59,245,709 | SYN | A/G | K/K | rs73482817 (DbSNP) |
| 11 | 59,478,120 | 59,478,120 | nonsense SNP | G/T | E/* | 1000GP (CHBJPT) |
| 11 | 100 | -100 | SYN | C/T | I/I | 1000GP (YRI) |
| 11 | 100 | -100 | NS | G/A | R/Q | 1000GP (YRI, YRI) |
| 11 | 100 | -100 | nonsense SNP | G/T | E/* | 1000GP (YRI) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| I194T | E231* | % Freq | CORP | |
|---|---|---|---|---|
| 1 | I | E | 92.93 | 0.582 |
| 2 | I | * | 6.45 | 1.200 |
| 3 | T | E | 0.61 | 0.582 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR4D10.aApr07-unspliced | main_exon | CDS | chr11 | 59,477,430 | 59,478,362 | + |
| 3UTR | chr11 | 59,478,362 | 59,478,365 | + | ||