OR4D8P Olfactory Receptor
| Gene Symbol | OR4D8P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | D |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR11-246, HsOR11.13.9P, ORL3605 |
| External Ids | HGNC: 15177 GeneBank: AB065809, AF399441, BK004568, NG_004232 ORDB: ORL3605 |
| Build #39 labels | OR4D8P |
| Chromosomal location | 11:59,491,652-59,492,610 (+) |
| Cluster | 11@59a |
| Synteny | CLIC#27 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4D10 | 91.72% | 302 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4D9C | 87% | 302 |
| Mouse | Or4d10 | 85% | 300 |
| Mouse | Or4d10b | 84% | 302 |
| Mouse | Or4d10c | 83% | 300 |
| Rat | Or4d10 | 84% | 300 |
| Rat | Or4d10c | 83% | 300 |
| Cow | OR4D11B | 81% | 302 |
| Orang | OR4D10F | 93% | 302 |
| Orang | OR4D10DP | 93% | 300 |
| Orang | OR4D10 | 92% | 302 |
| Orang | OR4D10E | 91% | 302 |
| Horse | OR4D9E | 86% | 302 |
| Horse | OR4D9F | 85% | 302 |
| Horse | OR4D9G | 84% | 302 |
| Horse | OR4D9H | 84% | 302 |
| Chimp | OR4D8 | 96% | 306 |
Sequence information
| Nucleotide sequence |
ATGGAGATGAAAAACTGTACCAGGGTAAAAGAATTTATTTTCCTTGGCCTAACCCAGAAT GGGGACACAAGATTGGTCCTATTTCTTTTCCTACTCTTGGTGTACATGACGACTCTGCTG GGAAACCTCCTCATCATGGTCACTGTCACCTGTGAATCTTGCCTTCACATGCCCATGTAT TTTTTGCTCCATAATTTATCTATTGCCGATATCTGCTTCTACTCCATCACAGAGCCCAAG GTTCTGGTGGACCTTCTGTCTGAGAGAAAGACCATCTCCTTCAATGGTTGCTTCACTCAG ATGTTTCTCTTCCACCTTATTGGAGGGGTGGATGCATTTTCTCTATCAGTGATGGCATTG GATCAATATGTGGCCATTTCCAAGTCCCTGCACTATGCGACCATCATGAGTAGAGACCGT TGCATTGGGCTCACAGTGGCTGCCTGGTTGGGGGGCTTTGTCCACTCCATTGTGCAGATT ACCCTGTTGCTCCCACTCCCTTTCTGTGGACCAAATGTTCTTGACACTTTCTACTGTGAT GTTCCCCAGGTTCTCAAACTCGCCCATACAGACATTTTCATACTTGAGCTGTTGATGATT TCCAACAATGGACTGCTCACCACACTGTGGTTTTTCCTGCTCCTGGTGTCCTACATGGTC ATATTATCATTACTCAAGTCTCAGGCAGGATAGGGCAGGAGGAAAGTCATCTCCACCTGC ACCTCCCACATCACTGTGGTGACCCTGCATTTTGTGCCCTGCATCTATGTCTATGCCCGG CCTTTCACTGCCCTCCCCACGGATAAGGCCATCTCTGTCACCTTCACTGTCATCTCCCCT CTGCTCAACCCTTGATCTACACTCTGAGAAACCATGAGATGAAGTCAACCATGAAGAGAC TGAAGACTCTGACCTTCTGATAGGAAATAGACCAGTGCTTCCCTCCTTCTCACCACTTT |
| Conceptual translation |
MEMKNCTRVKEFIFLGLTQNGDTRLVLFLFLLLVYMTTLLGNLLIMVTVTCESCLHMPMY FLLHNLSIADICFYSITEPKVLVDLLSERKTISFNGCFTQMFLFHLIGGVDAFSLSVMAL DQYVAISKSLHYATIMSRDRCIGLTVAAWLGGFVHSIVQITLLLPLPFCGPNVLDTFYCD VPQVLKLAHTDIFILELLMISNNGLLTTLWFFLLLVSYMVILSLLKSQAGXRRKVISTC TSHITVVTLHFVPCIYVYARPFTALPTDKAISVTFTVISPLL/PLIYTLRNHEMKSTMK RLKTLTFXEIDQCFPPSHHF Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 59,259,637 | 59,259,637 | SNP | A/C | rs10896979 (DbSNP) | |
| 11 | 59,259,846 | 59,259,846 | SNP | C/T | rs3862659 (DbSNP) | |
| 11 | 59,259,831 | 59,259,831 | SNP | C/T | rs10896980 (DbSNP) | |
| 11 | 59,492,164 | 59,492,164 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 11 | 59,492,358 | 59,492,358 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 11 | 59,492,373 | 59,492,373 | SNP | C/T | 1000GP (CEU) | |
| 11 | 59,492,314 | 59,492,314 | SNP | A/G | 1000GP (CHBJPT) | |
| 11 | 100 | -100 | SNP | T/C | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 59,259,025 | 59,262,083 | CopyNumber | #79 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.