OR4F16 Olfactory Receptor
| Gene Symbol | OR4F161 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | F |
| Pseudogene | No |
| CORP pseudogene probability score | 0.58 (pseudogene) |
| Aliases | OR1-1, OR7-21, ORL3141 |
| External Ids | HGNC: 15079 GeneBank: BK004219, BK004481, NM_001005221, NM_001005224, NM_001005277 ORDB: ORL3141 |
| Build #39 labels | OR4F16 |
| Chromosomal location | 1:685,719-686,654 (-) |
| Cluster | 1@1 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4F21 | 99.04% | 312 |
| OR4F29 | 100% | 312 |
| OR4F3 | 100% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4F1 | 91% | 312 |
| Mouse | Or4f7 | 82% | 312 |
| Rat | Or4f7b | 83% | 312 |
| Rat | Or4f7 | 83% | 312 |
| Rat | Or4f7c | 82% | 312 |
| Cow | OR4F1 | 90% | 312 |
| Cow | OR4F1D | 87% | 312 |
| Cow | OR4F1C | 88% | 309 |
| Orang | OR4F58BP | 72% | 309 |
| Horse | OR4F1 | 91% | 312 |
| Chimp | OR4F21 | 97% | 312 |
| Chimp | OR4F1 | 97% | 312 |
| Chimp | OR4F21BP | 96% | 310 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | CF552435 |
| mRNA | BC137568 |
Sequence information
| Nucleotide sequence |
ATGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTTTCTGGGACTCACTCATTCA TGGGAGATCCAGCTCCTCCTCCTAGTGTTTTCCTCTGTGCTCTATGTGGCAAGCATTACT GGAAACATCCTCATTGTGTTTTCTGTGACCACTGACCCTCACTTACACTCCCCCATGTAC TTTCTACTGGCCAGTCTCTCCTTCATTGACTTAGGAGCCTGCTCTGTCACTTCTCCCAAG ATGATTTATGACCTGTTCAGAAAGCGCAAAGTCATCTCCTTTGGAGGCTGCATCGCTCAA ATCTTCTTCATCCACGTCGTTGGTGGTGTGGAGATGGTGCTGCTCATAGCCATGGCCTTT GACAGATATGTGGCCCTATGTAAGCCCCTCCACTATCTGACCATTATGAGCCCAAGAATG TGCCTTTCATTTCTGGCTGTTGCCTGGACCCTTGGTGTCAGTCACTCCCTGTTCCAACTG GCATTTCTTGTTAATTTAGCCTTCTGTGGCCCTAATGTGTTGGACAGCTTCTACTGTGAC CTTCCTCGGCTTCTCAGACTAGCCTGTACCGACACCTACAGATTGCAGTTCATGGTCACT GTTAACAGTGGGTTTATCTGTGTGGGTACTTTCTTCATACTTCTAATCTCCTACGTCTTC ATCCTGTTTACTGTTTGGAAACATTCCTCAGGTGGTTCATCCAAGGCCCTTTCCACTCTT TCAGCTCACAGCACAGTGGTCCTTTTGTTCTTTGGTCCACCCATGTTTGTGTATACACGG CCACACCCTAATTCACAGATGGACAAGTTTCTGGCTATTTTTGATGCAGTTCTCACTCCT TTTCTGAATCCAGTTGTCTATACATTCAGGAATAAGGAGATGAAGGCAGCAATAAAGAGA GTATGCAAACAGCTAGTGATTTACAAGAGGATCTCA |
| Conceptual translation |
MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNILIVFSVTTDPHLHSPMY FLLASLSFIDLGACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVVGGVEMVLLIAMAF DRYVALCKPLHYLTIMSPRMCLSFLAVAWTLGVSHSLFQLAFLVNLAFCGPNVLDSFYCD LPRLLRLACTDTYRLQFMVTVNSGFICVGTFFILLISYVFILFTVWKHSSGGSSKALSTL SAHSTVVLLFFGPPMFVYTRPHPNSQMDKFLAIFDAVLTPFLNPVVYTFRNKEMKAAIKR VCKQLVIYKRIS Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 190 (Hasin) | |||
| 1 | 10,377 | 998,287 | CopyNumber | Variation_3274 (DGV) |
| 1 | 87,959 | 1,018,704 | CopyNumber | Variation_2294 (DGV) |
| 1 | 356,214 | 633,476 | CopyNumber | Variation_31594 (DGV) |
| 1 | 356,623 | 688,990 | CopyNumber | Variation_74278 (DGV) |
| 1 | 521,413 | 710,845 | CopyNumber | Variation_69577 (DGV) |
| 1 | 539,255 | 656,750 | CopyNumber | Variation_4190 (DGV) |
| 1 | 564,477 | 706,368 | CopyNumber | Variation_37560 (DGV), Variation_37599 (DGV) |
| 1 | 579,492 | 743,311 | CopyNumber | Variation_4191 (DGV) |
| 1 | 586,355 | 659,973 | CopyNumber | Variation_69571 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| 7tm_1.15.aApr07-unspliced | main_exon | 3UTR | chr1 | 685,716 | 685,719 | - |
| CDS | chr1 | 685,719 | 686,654 | - | ||
| 5UTR | chr1 | 686,654 | 687,453 | - | ||