OR4F17 Olfactory Receptor
| Gene Symbol | OR4F171 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | F |
| Pseudogene | No |
| CORP pseudogene probability score | 0.14 (functional) |
| Aliases | HsOR19.1.3, ORL3343 |
| External Ids | HGNC: 15381 GeneBank: AB065917, NM_001004195, NM_001005240 ORDB: ORL3343 |
| Build #39 labels | OR4F17, OR4F11P, OR4F18, OR4F19 |
| Chromosomal location | 19:110,679-111,593 (+) |
| Cluster | 19@0 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4F4 | 99.02% | 305 |
| OR4F5 | 99.02% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4F26P | 78% | 304 |
| Mouse | Or4f4-ps | 84% | 298 |
| Mouse | Or4f17-ps | 83% | 298 |
| Mouse | Or4f4b | 82% | 297 |
| Rat | Or4f4b-ps | 82% | 297 |
| Cow | OR4F4 | 85% | 303 |
| Orang | OR4F4 | 95% | 284 |
| Orang | OR4F17P | 96% | 278 |
| Horse | OR4F17B | 84% | 305 |
| Chimp | OR4F4P | 98% | 302 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC136908 |
Sequence information
| Nucleotide sequence |
ATGGTGACTGAATTCATTTTTCTGGGTCTCTCTGATTCTCAGGGACTCCAGACCTTCCTA TTTATGTTGTTTTTTGTATTCTATGGAGGAATCGTGTTTGGAAACCTTCTTATTGTCATA ACAGTGGTATCTGACTCCCACCTTCACTCTCCCATGTACTTCCTGCTAGCCAACCTCTCA CTCATTGATCTGTCTCTGTCTTCAGTCACAGCCCCCAAGATGATTACTGACTTTTTCAGC CAGCGCAAAGTCATCTCTTTCAAGGGCTGCCTTGTTCAGATATTTCTCCTTCACTTCTTT GGTGGGAGTGAGATGGTGATCCTCATAGCCATGGGCTTTGACAGATATATAGCAATATGC AAACCCCTACACTACACTACAATTATGTGTGGCAACGCATGTGTCGGCATTATGGCTGTC GCATGGGGAATTGGCTTTCTCCATTCGGTGAGCCAGTTGGCCTTTGCCGTGCACTTACCC TTCTGTGGTCCCAATGAGGTCGATAGTTTTTATTGTGACCTTCCTAGGGTAATCAAACTT GCCTGTACAGATACCTACAGGCTAGATATTATGGTCATTGCTAACAGTGGTGTGCTCACT GTGTGTTCTTTTGTTCTTCTAATCATCTCATACACTATCATCCTAATGACCATCCAGCAT CGCCCTTTAGATAAGTCGTCCAAAGCTCTGTCCACTTTGACTGCTCACATTACAGTAGTT CTTTTGTTCTTTGGACCATGTGTCTTTATTTATGCCTGGCCATTCCCCATCAAGTCATTA GATAAATTCCTTGCTGTATTTTATTCTGTGATCACCCCTCTCTTGAACCCAATTATATAC ACACTGAGGAACAAAGACATGAAGACGGCAATAAGACAGCTGAGAAAATGGGATGCACAT TCTAGTGTAAAGTTT |
| Conceptual translation |
MVTEFIFLGLSDSQGLQTFLFMLFFVFYGGIVFGNLLIVITVVSDSHLHSPMYFLLANLS LIDLSLSSVTAPKMITDFFSQRKVISFKGCLVQIFLLHFFGGSEMVILIAMGFDRYIAIC KPLHYTTIMCGNACVGIMAVAWGIGFLHSVSQLAFAVHLPFCGPNEVDSFYCDLPRVIKL ACTDTYRLDIMVIANSGVLTVCSFVLLIISYTIILMTIQHRPLDKSSKALSTLTAHITVV LLFFGPCVFIYAWPFPIKSLDKFLAVFYSVITPLLNPIIYTLRNKDMKTAIRQLRKWDAH SSVKF Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 19 | 60,070 | 172,370 | CopyNumber | Variation_73240 (DGV) |
| 19 | 60,070 | 243,098 | CopyNumber | Variation_73242 (DGV) |
| 19 | 60,179 | 119,175 | CopyNumber | Variation_78021 (DGV), Variation_89026 (DGV) |
| 19 | 60,354 | 168,972 | CopyNumber | Variation_30879 (DGV) |
| 19 | 89,677 | 119,175 | CopyNumber | Variation_89027 (DGV) |
| 19 | 89,677 | 123,389 | CopyNumber | Variation_78022 (DGV) |
| 19 | 89,677 | 165,529 | CopyNumber | Variation_78024 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR4F17.aApr07 | exon_5UTR | chr19 | 107,146 | 107,157 | + | |
| main_exon | 5UTR | chr19 | 110,625 | 110,679 | + | |
| CDS | chr19 | 110,679 | 111,593 | + | ||
| 3UTR | chr19 | 111,593 | 111,596 | + | ||