OR4F28P Olfactory Receptor
| Gene Symbol | OR4F28P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | F |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR15.2.5P |
| External Ids | HGNC: 31229 GeneBank: NG_004358 |
| Build #39 labels | |
| Chromosomal location | 15:101,875,964-101,876,898 (+) |
| Cluster | 15@102 |
| Synteny | CLIC#32 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4F21 | 98.4% | 312 |
| OR4F29 | 98.08% | 312 |
| OR4F3 | 98.08% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4F1 | 91% | 312 |
| Mouse | Or4f7 | 81% | 312 |
| Rat | Or4f7 | 82% | 312 |
| Rat | Or4f7b | 82% | 312 |
| Rat | Or4f7c | 81% | 312 |
| Cow | OR4F1 | 90% | 312 |
| Cow | OR4F1D | 88% | 312 |
| Cow | OR4F1C | 88% | 309 |
| Orang | OR4F58BP | 72% | 309 |
| Horse | OR4F1 | 90% | 312 |
| Horse | OR4F1F | 87% | 286 |
| Chimp | OR4F21 | 97% | 312 |
| Chimp | OR4F1 | 97% | 312 |
| Chimp | OR4F21BP | 96% | 310 |
Sequence information
| Nucleotide sequence |
ATGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTTTCTGGGACTCACTCATTCA TGGGAGATCCAGCTCCTCCTCCTAGTGTTTTCCTCTGTGCTCTATGTGGCAAGCATTACT GGAAACATCCTCATTGTGTTTTCTGTGACCACTGACCCTCACTTACACTCCCCCATGTAC TTTCTACTGGCCAGTCTCTCCTTCATTGACTTAGGAGCCTGCTCTGTCACTTCTCCCAAG ACGATTTATGACCTGTTCAGAAAGCGCAAAGTCATCTCCTTTGGAGGCTGCATCGCTCAA ATCTTCTTCATCCACGTCATTGGTGGTGTGGAGATGGTGCTGCTCATAGCCATGGCCTTT GACAGATATGTGGCCCTATTAAGCCCCTCCACTATCTGACCATTATGAGCCCAAGAATGT GCCTTTCATTTCTGGCTGTTGCCTGGACCCTTGGTGTCAGTCACTCCCTGTTCCAACTGG CATTTCTTGTTAATTTACCCTTCTGTGGCCCTAATGTGTTGGACAGCTTCTACTGTGACC TTCCTCGGCTTCTCAGACTAGCCTGTACCGACACCTACAGATTGCAGTTCACGGTCACTG TTAACAGTGGGTTTATCTGTGTGGGTACTTTCTTCATACTTCTAATCTCCTACGTCTTCA TCCTGTTTACTGTTTGGAAACATTCCTCAGGTGGTTCATCCAAGGCCCTTTCCACTCTTT CAGCTCACAGCACAGTGGTCCTTTTGTTCTTTGGTCCACCCATGTTTGTGTATACACGGC CACACCCTAATTCACAGATGGACAAGTTTCTGGCTATTTTTGATGCAGTTCTCACTCCTT TTCTGAATCCAGTTGTCTATACATTCAGGAATAAGGAGATGAAGGCAGCACTAAAGAGAG TATGCAAACAGCTAGTGATTTACAAGAAGATCTCA |
| Conceptual translation |
MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNILIVFSVTTDPHLHSPMY FLLASLSFIDLGACSVTSPKTIYDLFRKRKVISFGGCIAQIFFIHVIGGVEMVLLIAMAF DRYVAL/KPLHYLTIMSPRMCLSFLAVAWTLGVSHSLFQLAFLVNLPFCGPNVLDSFYC DLPRLLRLACTDTYRLQFTVTVNSGFICVGTFFILLISYVFILFTVWKHSSGGSSKALST LSAHSTVVLLFFGPPMFVYTRPHPNSQMDKFLAIFDAVLTPFLNPVVYTFRNKEMKAALK RVCKQLVIYKKIS Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 15 | 102,271,630 | 102,431,074 | CopyNumber | Variation_3985 (DGV) |
| 15 | 102,277,237 | 102,431,074 | CopyNumber | Variation_2202 (DGV) |
| 15 | 102,391,933 | 102,520,985 | CopyNumber | Variation_72386 (DGV) |
| 15 | 102,399,982 | 102,450,962 | CopyNumber | Variation_72387 (DGV) |
| 15 | 102,404,669 | 102,446,687 | CopyNumber | Variation_32066 (DGV) |
| 15 | 102,405,864 | 102,444,984 | CopyNumber | Variation_87919 (DGV) |
| 15 | 102,416,067 | 102,419,101 | Deletion | #241 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.