OR4F2P Olfactory Receptor
| Gene Symbol | OR4F2P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | F |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HS191N21, dJ191N21.4, hs6M1-11, HsOR6.5.1P, ORL3149 |
| External Ids | HGNC: 8299 GeneBank: NG_004259, NG_004682 ORDB: ORL3149 |
| Build #39 labels | OR4F2P |
| Chromosomal location | 11:86,652-87,586 (-) |
| Cluster | 11@0 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4F1P | 99.04% | 312 |
| OR4F7P | 99.03% | 308 |
| OR4F8P | 98.08% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4F1 | 91% | 312 |
| Mouse | Or4f7 | 82% | 312 |
| Rat | Or4f7 | 83% | 312 |
| Rat | Or4f7b | 83% | 312 |
| Rat | Or4f7c | 82% | 312 |
| Cow | OR4F1 | 89% | 312 |
| Cow | OR4F1D | 87% | 312 |
| Cow | OR4F1C | 87% | 309 |
| Orang | OR4F58BP | 72% | 309 |
| Horse | OR4F1 | 90% | 312 |
| Chimp | OR4F21 | 96% | 312 |
| Chimp | OR4F1 | 96% | 312 |
| Chimp | OR4F21BP | 95% | 310 |
Sequence information
| Nucleotide sequence |
ATGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTTTCTGGGACTCACTCATTCA TGGGAGATCCAGCTCCTCCTCCTAGTGTTTTCCTCTGTGCTCTATGTGGCAAGCATTACT GGAAACATCCTCATTGTGTTTTCTGTGACCACTGACCCTCACTTACACTCCCCCATGTAC TTTCTACTGGCCAGTCTCTCCTTCATTGACTTAGGAGCCTGCTCTGTCACTTCTCCCAAG ATGATTTATGACCTGTTCAGAAAGTGCAAAGTCATCTCCTTTGGAGGCTGCATCGCTCAA ATCTTCTTCATCCACGTCATTGGTGGTGTGGAGATGGTGCTGCTCATAGCCATGGCCTTT GACAGTTATGTGGCCCTATTAAGCCCCGCCACTATCTGACCATTATGAGCCCAAGAATGT GCCTTTCATTTCTGGCTGTTGCCTGGACCCTTGGTGTCAGTCACTCCCTGTTCCAACTGG CATTTCTTGTTAATTTACCCTTCTGTGGCCCTAATGTGTTGGACAGCTTCTACTGTGACC TTCCTCGGCTTCTCAGACTAGCCTGTACCGACACCTACAGATTGCAGTTCATGGTCACTG TTAACAGTGGGTTTATCTGTGTGGGTACTTTCTTCATACTTCTAATCTCCTACATCTTCA TCCTGTTTACTGTTTGGAAACATTCCTCAGGTGGTTCATCCAAGGCCCTTTCCACTCTTT CAGCTCACAGCACAGCGGTCCTTTTGTTCTTTGGTCCACCCATGTTTGTGTATACATGGC CACACCCTAATTCACAGATGGACAAGTTTCTGGCTATTTTTGATGCAGTTCTCACTCCTT TTCTGAATCCAGTTGTCTATACATTCAGGAATAAGGAGATGAAGGCAGCAATAAAGAGAG TATGCAAACAGCTAGTGATTTACAAGAAGATCTCA |
| Conceptual translation |
MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNILIVFSVTTDPHLHSPMY FLLASLSFIDLGACSVTSPKMIYDLFRKCKVISFGGCIAQIFFIHVIGGVEMVLLIAMAF DSYVAL/KPRHYLTIMSPRMCLSFLAVAWTLGVSHSLFQLAFLVNLPFCGPNVLDSFYC DLPRLLRLACTDTYRLQFMVTVNSGFICVGTFFILLISYIFILFTVWKHSSGGSSKALST LSAHSTAVLLFFGPPMFVYTWPHPNSQMDKFLAIFDAVLTPFLNPVVYTFRNKEMKAAIK RVCKQLVIYKKIS Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 150 (Hasin) | |||
| 11 | 60,059 | 103,970 | CopyNumber | Variation_71208 (DGV) |
| 11 | 60,059 | 216,243 | CopyNumber | Variation_71209 (DGV) |
| 11 | 60,126 | 99,349 | CopyNumber | Variation_31791 (DGV) |
| 11 | 75,881 | 99,481 | CopyNumber | Variation_85575 (DGV) |
| 11 | 84,924 | 95,856 | CopyNumber | Variation_85576 (DGV) |
| 11 | 84,924 | 130,474 | CopyNumber | Variation_85577 (DGV) |
| 11 | 87,297 | 87,503 | Ins(10) | #8(modil) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.