OR4F5 Olfactory Receptor
| Gene Symbol | OR4F51 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | F |
| Pseudogene | No |
| CORP pseudogene probability score | 0.14 (functional) |
| Aliases | HsOR1.1.3 |
| External Ids | HGNC: 14825 GeneBank: AB065592, NM_001005484 |
| Build #39 labels | OR4F5 |
| Chromosomal location | 1:69,091-70,005 (+) |
| Cluster | 1@0a |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4F17 | 99.02% | 305 |
| OR4F4 | 98.69% | 305 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4F26P | 78% | 304 |
| Mouse | Or4f4-ps | 83% | 298 |
| Mouse | Or4f17-ps | 82% | 298 |
| Mouse | Or4f4b | 81% | 297 |
| Rat | Or4f4b-ps | 82% | 297 |
| Cow | OR4F4 | 85% | 303 |
| Orang | OR4F4 | 95% | 284 |
| Orang | OR4F17P | 95% | 278 |
| Horse | OR4F17B | 83% | 305 |
| Horse | OR4F17 | 82% | 305 |
| Chimp | OR4F4P | 98% | 302 |
Sequence information
| Nucleotide sequence |
ATGGTGACTGAATTCATTTTTCTGGGTCTCTCTGATTCTCAGGAACTCCAGACCTTCCTA TTTATGTTGTTTTTTGTATTCTATGGAGGAATCGTGTTTGGAAACCTTCTTATTGTCATA ACAGTGGTATCTGACTCCCACCTTCACTCTCCCATGTACTTCCTGCTAGCCAACCTCTCA CTCATTGATCTGTCTCTGTCTTCAGTCACAGCCCCCAAGATGATTACTGACTTTTTCAGC CAGCGCAAAGTCATCTCTTTCAAGGGCTGCCTTGTTCAGATATTTCTCCTTCACTTCTTT GGTGGGAGTGAGATGGTGATCCTCATAGCCATGGGCTTTGACAGATATATAGCAATATGC AAGCCCCTACACTACACTACAATTATGTGTGGCAACGCATGTGTCGGCATTATGGCTGTC ACATGGGGAATTGGCTTTCTCCATTCGGTGAGCCAGTTGGCGTTTGCCGTGCACTTACTC TTCTGTGGTCCCAATGAGGTCGATAGTTTTTATTGTGACCTTCCTAGGGTAATCAAACTT GCCTGTACAGATACCTACAGGCTAGATATTATGGTCATTGCTAACAGTGGTGTGCTCACT GTGTGTTCTTTTGTTCTTCTAATCATCTCATACACTATCATCCTAATGACCATCCAGCAT CGCCCTTTAGATAAGTCGTCCAAAGCTCTGTCCACTTTGACTGCTCACATTACAGTAGTT CTTTTGTTCTTTGGACCATGTGTCTTTATTTATGCCTGGCCATTCCCCATCAAGTCATTA GATAAATTCCTTGCTGTATTTTATTCTGTGATCACCCCTCTCTTGAACCCAATTATATAC ACACTGAGGAACAAAGACATGAAGACGGCAATAAGACAGCTGAGAAAATGGGATGCACAT TCTAGTGTAAAGTTT |
| Conceptual translation |
MVTEFIFLGLSDSQELQTFLFMLFFVFYGGIVFGNLLIVITVVSDSHLHSPMYFLLANLS LIDLSLSSVTAPKMITDFFSQRKVISFKGCLVQIFLLHFFGGSEMVILIAMGFDRYIAIC KPLHYTTIMCGNACVGIMAVTWGIGFLHSVSQLAFAVHLLFCGPNEVDSFYCDLPRVIKL ACTDTYRLDIMVIANSGVLTVCSFVLLIISYTIILMTIQHRPLDKSSKALSTLTAHITVV LLFFGPCVFIYAWPFPIKSLDKFLAVFYSVITPLLNPIIYTLRNKDMKTAIRQLRKWDAH SSVKF Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 1 | 69,552 | 69,552 | SYN | C/G | A/A | rs55874132 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 1 | 27,982 | 177,346 | CopyNumber | Variation_0675 (DGV), Variation_2041 (DGV) |
| 1 | 55,394 | 86,303 | CopyNumber | Variation_0991 (DGV) |
| 1 | 66,008 | 79,078 | CopyNumber | Variation_1534 (DGV) |
| 1 | 10,377 | 998,287 | CopyNumber | Variation_3274 (DGV) |
| 1 | 11,931 | 125,961 | CopyNumber | Variation_30360 (DGV) |
| 1 | 10,499 | 91,591 | CopyNumber | Variation_68172 (DGV) |
| 1 | 10,499 | 177,368 | CopyNumber | Variation_68173 (DGV) |
| 1 | 11,516 | 250,293 | CopyNumber | Variation_74274 (DGV), Variation_83989 (DGV) |
| 1 | 35,881 | 89,484 | CopyNumber | Variation_74275 (DGV) |
| 1 | 11,516 | 89,484 | CopyNumber | Variation_74276 (DGV) |
| 1 | 35,881 | 84,611 | CopyNumber | Variation_83987 (DGV) |
| 1 | 11,516 | 84,611 | CopyNumber | Variation_83988 (DGV) |
| 1 | 40,761 | 69,992 | CopyNumber | Variation_83990 (DGV) |
| 1 | 60,246 | 84,611 | CopyNumber | Variation_83991 (DGV) |
| CopyNumber | 211 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| T141A | % Freq | CORP | |
|---|---|---|---|
| 1 | T | 81.03 | 0.298 |
| 2 | A | 18.97 | 0.298 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR4F5.aApr07-unspliced | main_exon | CDS | chr1 | 69,091 | 70,005 | + |
| 3UTR | chr1 | 70,005 | 70,008 | + | ||