OR4F8P Olfactory Receptor
| Gene Symbol | OR4F8P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | F |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR19.1.4P, ORL3783 |
| External Ids | HGNC: 15395 GeneBank: NG_004359, NG_004682 ORDB: ORL3783 |
| Build #39 labels | OR4F8P, OR4F20P, OR4F9P |
| Chromosomal location | 19:156,282-157,216 (-) |
| Cluster | 19@0 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4F1P | 98.4% | 312 |
| OR4F2P | 98.08% | 312 |
| OR4F7P | 99.03% | 308 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4F1 | 90% | 312 |
| Mouse | Or4f7 | 81% | 312 |
| Rat | Or4f7 | 82% | 312 |
| Rat | Or4f7b | 82% | 312 |
| Rat | Or4f7c | 81% | 312 |
| Cow | OR4F1 | 89% | 312 |
| Cow | OR4F1D | 87% | 312 |
| Cow | OR4F1C | 87% | 309 |
| Orang | OR4F58BP | 72% | 309 |
| Horse | OR4F1 | 90% | 312 |
| Chimp | OR4F21 | 96% | 312 |
| Chimp | OR4F1 | 96% | 312 |
| Chimp | OR4F21BP | 95% | 310 |
Sequence information
| Nucleotide sequence |
ATGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTTTCTGGGACTCACTCATTCA TGGGAGATCCAGCTCCTCCTCCTAGTGTTTTCCTCTGTGCTCTATGTGGCAAGCATTACT GGAAACATCCTCATTGTGTTTTCTGTGACCACTGACCCTCACTTACACTCCCCCATGTAC TTTCTACTGGTCAGTCTCTCCTTCATTGACTTAGGAGCCTGCTCTGTCACTTCTCCCAAG ATGATTTATGACCTGTTCAGAAAGCGCAAAGTCATCTCCTTTGGAGGCTGCATCGCTCAA ATCTTCTTCATCCACGTCATTGGTGGTGTGGAGATGGTGCTGCTCATAGCCATGGCCTTT GACAGTTATGTGGCCCTATTAAGCCCCTCCACTATCTGACCATTATGAGCCCAAGAATGT GCCTTTCATTTCTGGCTGTTGCCTGGACCCTTGTTGTCAGTCACTCCCTGTTCCAACTGG CATTTCTTGTTAATTTACCCTTCTGTGGCCCTAATGTGTTGGACAGCTTCTACTGTGACC TTCCTCAGCTTCTCAGACTAGCCTGTACCGACACCTACAGATTGCAGTTCATGGTCACTG TTAACAGTGGGTTTATCTGTGTGGGTACTTTCTTCATACTTCTAATCTCCTACGTCTTCA TCCTGTTTACTGTTTGGAAACATTCCTCAGGTGGTTCATCCAAGGCCCTTTCCACTCTTT CAGCTCACAGCACAGCGGTCCTTTTGTTCTTTGGTCCACCCATGTTTGTGTATACATGGC CACACCCTAATTCACAGATGGACAAGTTTCTGGCTATTTTTGATGCAGTTCTCACTCCTT TTCTGAATCCAGTTGTCTATACATTCAGGAATAAGGAGATGAAGGCAGCAATAAAGAGAG TATGCAAACAGCTAGTGATTTACAAGAAGATCTCA |
| Conceptual translation |
MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNILIVFSVTTDPHLHSPMY FLLVSLSFIDLGACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVIGGVEMVLLIAMAF DSYVAL/KPLHYLTIMSPRMCLSFLAVAWTLVVSHSLFQLAFLVNLPFCGPNVLDSFYC DLPQLLRLACTDTYRLQFMVTVNSGFICVGTFFILLISYVFILFTVWKHSSGGSSKALST LSAHSTAVLLFFGPPMFVYTWPHPNSQMDKFLAIFDAVLTPFLNPVVYTFRNKEMKAAIK RVCKQLVIYKKIS Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 19 | 157,003 | 157,003 | SNP | C/T | rs55816419 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 228 (Hasin) | |||
| 19 | 60,070 | 172,370 | CopyNumber | Variation_73240 (DGV) |
| 19 | 60,070 | 243,098 | CopyNumber | Variation_73242 (DGV) |
| 19 | 60,354 | 168,972 | CopyNumber | Variation_30879 (DGV) |
| 19 | 89,677 | 165,529 | CopyNumber | Variation_78024 (DGV) |
| 19 | 122,887 | 172,370 | CopyNumber | Variation_73243 (DGV) |
| 19 | 128,306 | 168,972 | CopyNumber | Variation_32226 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.