OR4G4P Olfactory Receptor
| Gene Symbol | OR4G4P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | G |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | HsOR1.1.1P, ORL3188 |
| External Ids | HGNC: 14822 GeneBank: NG_004148 ORDB: ORL3188 |
| Build #39 labels | OR4G4P |
| Chromosomal location | 1:52,452-53,395 (+) |
| Cluster | 1@0a |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4G3P | 99.68% | 314 |
| OR4G6P | 99.04% | 314 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4G9 | 70% | 309 |
| Mouse | Or4g7 | 57% | 312 |
| Rat | Or4g7 | 57% | 314 |
| Cow | OR4G9 | 70% | 314 |
| Orang | OR4G3P | 90% | 305 |
| Orang | OR4G3BP | 90% | 294 |
| Horse | OR4G25 | 68% | 314 |
| Chimp | OR4G3P | 97% | 259 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BG206860 |
Sequence information
| Nucleotide sequence |
ATGGATAGAGTAAATAATTCTGCGGTATCTAAATTTGTATTGATTGGACTTTCAAGCTCT TGGGAGATGCATCTTTTTCTTTTTTGGTTCTTCTCTGTGTTCTACATGGGAATTATCCTG GAAAATCTCTTCATTGTGTTCACAGTAATTATTGACTCTCATTTAAATTCCCCAGGTACT GCCTACTGGCCAACATTTATCTTCTTGATCTGGGTCTTCTCCTACAGTTCTGACTTTTTC ACTAACTGCAGCATCATTTCTTTTCCAAGATGCATCATACAGATATTTTTCATTTGTGTC ATGCGTAAAAATTGAGATGGTGCTGCTCATAACCATGGCATAGAGCAGGTACACTGCCAA TCTGTAAGCCTCCCCATTACCTGACCACAATGAACCCCAAAATGTGTGTTTCCTTTGTTG GAGGCATCCTGGATAGTCAGGATAATCCATGCTGTATCTCAGTTTGTTTTTGCCATAAAC TTGCCTTTTTGTGGCCCTAATAGAGTAGGTAGTTTTCACTGTGATTTTCCTTATGTCATG AAACTTGCTTGTGTAGACACTTACAAACTAGAGGTTGTAGTCACTGCTAACAGTGGGCTT ATATCCATAGCTACCTGTTTCTTATTAATAATATCCTATATTTTCATTTCGGTAACCGTC TAGAATCCTTCTTCAGGAGACTTATCTAAAGCATTTGTGTCATGTTAGATCACATCACAG TAGGGATTTTGTTTTTTATGCCATGTATATTTCTGTATGTGTAGCCTTTGCCTAAAACAA CACATGATTAATATTTGTTCATTGTTCCTTTTGCTATCACCCCTGTCTAGGATCTACACA TTAAGAAACAAAGACATGAACGTCTCCATGGAAAGACTGGGAAAATGGATTGCAGGTTCT AGCAGGATGTCATAATAAATGGTGCATATCCAGAGTGCAAGATG |
| Conceptual translation |
MDRVNNSAVSKFVLIGLSSSWEMHLFLFWFFSVFYMGIILENLFIVFTVIIDSHLNSP/ YCLLANIYLLDL\FSYSSDFFTNCSIISFPRCIIQIFFICVMRK\EMVLLITMAXRY TA\CKPPHYLTTMNPKMCVS\LEASWIVRIIHAVSQFVFAINLPFCGPNRVGSFHCDF PYVMKLACVDTYKLEVVVTANSGLISIATCFLLIISYIFISVTVXPSSGDLSKAFVSC/br/>SDHITVGILFFMPCIFLYVXLPKTTHDXLFIVP\LSPLSRIYTLRNKDMNVSMERLG KWIAGSSRMSXMVH/PECKM Protein domains and features |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| CopyNumber | 214 (Hasin) | |||
| 1 | 10,377 | 998,287 | CopyNumber | Variation_3274 (DGV) |
| 1 | 10,499 | 91,591 | CopyNumber | Variation_68172 (DGV) |
| 1 | 10,499 | 177,368 | CopyNumber | Variation_68173 (DGV) |
| 1 | 11,516 | 55,373 | CopyNumber | Variation_74277 (DGV) |
| 1 | 11,516 | 84,611 | CopyNumber | Variation_83988 (DGV) |
| 1 | 11,516 | 89,484 | CopyNumber | Variation_74276 (DGV) |
| 1 | 11,516 | 250,293 | CopyNumber | Variation_74274 (DGV), Variation_83989 (DGV) |
| 1 | 11,931 | 125,961 | CopyNumber | Variation_30360 (DGV) |
| 1 | 27,982 | 177,346 | CopyNumber | Variation_0675 (DGV), Variation_2041 (DGV) |
| 1 | 35,881 | 84,611 | CopyNumber | Variation_83987 (DGV) |
| 1 | 35,881 | 89,484 | CopyNumber | Variation_74275 (DGV) |
| 1 | 40,761 | 69,992 | CopyNumber | Variation_83990 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR4G4P.aApr07-unspliced | main_exon | CDS_partial | chr1 | 53,277 | 53,395 | + |
| 3UTR | chr1 | 53,395 | 54,288 | + | ||