OR4K11P Olfactory Receptor
| Gene Symbol | OR4K11P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | K |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR21-1, HsOR21.1.1P, ORL3799 |
| External Ids | HGNC: 15402 GeneBank: AF546490-AF546503, BK004615, NG_004161 ORDB: ORL3799 |
| Build #39 labels | OR4K11P |
| Chromosomal location | 21:13,544,231-13,545,185 (-) |
| Cluster | 21@15 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4K15 | 94.03% | 318 |
| OR4K8P | 97.8% | 318 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4K15 | 91% | 318 |
| Mouse | Or4k15 | 90% | 318 |
| Rat | Or4k15 | 90% | 318 |
| Cow | OR4K15 | 90% | 311 |
| Orang | OR4K15 | 95% | 318 |
| Orang | OR4K15H | 94% | 318 |
| Horse | OR4K15 | 88% | 318 |
| Chimp | OR4K15 | 94% | 318 |
| Chimp | OR4K11BP | 96% | 301 |
Sequence information
| Nucleotide sequence |
ATGAATGAGACAAATCATTCTTGGGTGACAGAATTTGTGTTGCTGGGACTGTCTAGTTCA AGGGAGCTCCAACCTTTCTTGTTTCTTATATTTTCACTACTTTATCTAGCAATTCTGTTG GGCAACTTTCTCATCATCCTCACTGTGACCTCAGATTCCCGCCTTCACACCCCCATGTAC TTTCTGCTTGCCAACCTGTCATTTATAGACGTATGTGTTGCCTCTTCTGCTACCCCTAAA ATGATTGCAGACTTTCTGGTTGAGCACAAGACTATTTCTTTTGATGCCCGCCTGGCCCAG ATTTTCTTTGTTCATCTCTTCACTGGCAGTGAAATGGTGCTCCTAGTTTCCATGGCCTAT GACCGTTATGTTGCTATATGCAAACCTCCCCACTACATGACAATCATGAGCTGCTGTGTA TGTGTTGTGCTCTTCCTCATTTCCTGGTTTGTGGGCTTCATCCATACCACCAGCCAGTTG GCATTCACTGTTAATCTGCCATTTTGTGGTCCTAATAAGGTAGATAGTTTTTTTCTGTGA CCTTCCTCTAGTGACCAAGTTAGCCTGCATAGACACTTATGTTGTCAGCCTACTAATAGT TGCAGATAGTGGCTTTCTTTCTCTGAGTTCCTTTCTCCTCTTGGTTGTCTCCTACACTGT AATACTTGTTACAGTTAGGAATAGCTCCTCTGTAAGCATGGTGAAGGCCTGCTCCACATT GACTGCTCACATCACTGTGGTCACTTTATTCTTTGGACCGTGTATTTTCATCTATGTGTG GCCCTTCAGCAGTTACTCAGTTGACAAAGTCCTTGCTGTATTCTACACCATCTTCACGTC TATTTTAAACCCTGTAATCTACATGCTAAGAAACAAAGAAGTGAAGGCAGCTATGTCAAA ACTGAAGAGTCGGTATCAGAAGCTTGGTCAGGTTTCTGTAGTCATAAGAAACGTT |
| Conceptual translation |
MNETNHSWVTEFVLLGLSSSRELQPFLFLIFSLLYLAILLGNFLIILTVTSDSRLHTPMY FLLANLSFIDVCVASSATPKMIADFLVEHKTISFDARLAQIFFVHLFTGSEMVLLVSMAY DRYVAICKPPHYMTIMSCCVCVVLFLISWFVGFIHTTSQLAFTVNLPFCGPNKVDSFF\ DLPLVTKLACIDTYVVSLLIVADSGFLSLSSFLLLVVSYTVILVTVRNSSSVSMVKACST LTAHITVVTLFFGPCIFIYVWPFSSYSVDKVLAVFYTIFTSILNPVIYMLRNKEVKAAMS KLKSRYQKLGQVSVVIRNV Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 21 | 13,544,503 | 13,544,503 | SNP | T/A | 1000GP (CEU) | |
| 21 | 14,916,664 | 14,916,664 | SNP | A/G | rs7275581 (DbSNP) | |
| 21 | 14,916,669 | 14,916,669 | SNP | C/T | rs12481974 (DbSNP) | |
| 21 | 14,916,824 | 14,916,824 | SNP | A/T | rs7280211 (DbSNP) | |
| 21 | 14,917,181 | 14,917,181 | SNP | C/T | rs62215474 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 21 | 14,369,207 | 15,152,897 | CopyNumber | Variation_8890 (DGV), Variation_34632 (DGV) |
| 21 | 14,369,207 | 15,336,787 | CopyNumber | Variation_9322 (DGV) |
| 21 | 14,432,699 | 15,336,787 | CopyNumber | Variation_3225 (DGV) |
| 21 | 14,594,235 | 15,148,133 | CopyNumber | Variation_38448 (DGV) |
| 21 | 14,634,532 | 15,339,752 | CopyNumber | Variation_4110 (DGV) |
| 21 | 14,640,400 | 15,028,535 | CopyNumber | Variation_50729 (DGV) |
| 21 | 14,640,400 | 15,105,485 | CopyNumber | Variation_50730 (DGV) |
| 21 | 14,640,400 | 15,173,846 | CopyNumber | Variation_10591 (DGV) |
| 21 | 14,691,329 | 14,969,929 | CopyNumber | Variation_8891 (DGV) |
| 21 | 14,768,343 | 14,973,902 | CopyNumber | Variation_9828 (DGV) |
| 21 | 14,910,018 | 15,073,331 | CopyNumber | Variation_0811 (DGV), Variation_2255 (DGV) |
| 21 | 14,914,552 | 14,917,606 | Deletion | #249 (Waszak) |
| 21 | 14,915,589 | 14,916,569 | InDel | Variation_79311 (DGV), Variation_90693 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.