OR4K12P Olfactory Receptor
| Gene Symbol | OR4K12P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | K |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR21-2, HsOR21.1.2P, ORL3800 |
| External Ids | HGNC: 15403 GeneBank: BK004616, NG_004160 ORDB: ORL3800 |
| Build #39 labels | OR4K12P |
| Chromosomal location | 21:13,581,072-13,582,004 (-) |
| Cluster | 21@15 |
| Synteny | CLIC#0 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4K6P | 93.27% | 312 |
| OR4K7P | 97.75% | 311 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4K6 | 86% | 312 |
| Mouse | Or4k6 | 84% | 312 |
| Rat | Or4k6 | 84% | 312 |
| Cow | OR4K6 | 86% | 312 |
| Orang | OR4K6P | 90% | 310 |
| Horse | OR4K6 | 86% | 312 |
| Chimp | OR4K7P | 98% | 309 |
| Chimp | OR4K7BP | 98% | 309 |
| Chimp | OR4K7DP | 97% | 311 |
| Chimp | OR4K7CP | 95% | 310 |
Sequence information
| Nucleotide sequence |
ATGGAGGGGTTTAACTATTCCAGAGTATCTGAATTCATGTTACTTGGACTTACTGATTCT CCTGAACTCCAGATATTCTTTTTTGTGGTGTTTTCTGTCTTCTATTTAATGACCATGTTG GGCAACTGCCTGATTTTACTCACTGTCCTATCCACCTCACACCTTCACTCTCGCACGTAC TTCCTGCTCAGCAACCTGTCTCATTGACATGTGCCTGTCCTCCTTTGCCACACCAAAGAT GATTATGGACTTTTTTGCTCTGCGTAAGACCATCTCTTTTGAAGGCTGCATTTCTCAGAT CTTTTTTTTACACCTCTTCAATGGGACTGAGATTGTGCTGCTGATCTCCATGTCTTTTGA CAGGTATATTGCCATATGTAAACCTCTCCGCTATTCAACAATTATGAGCCAAAGAGTGTG TGTTGAGCTTGTGGCAGTTTCTTGTTGGACAGTGGGCTTTCTACATACAATGAGCCAATT AGTTTTTCCCTCTATTTGCCCTTCTGTGTTCCCAATGTTGTAGACAGTTTTTTCTGTGAT CTTCCTTTGGTCATCCAGTTAGCTTGTATAGATATTTATGTTCTTGGGACCTCCATGATT TCAACCAGTGGTGTGACTGCTCTTACAAGTTTTCTGCTTTTGCTCACCTCCTACATCATT GTTCTTAATACTATCAGGGACTACTCCTCCACAGGATCCTCCAAGGCTCTTTCTACCTGT ACAGCACATTTTATTGTTGTGTTAATGTTCTTTGGGCCCTGTATTTTCATTTATGTGTGG CCTTCCACAAACTTCCTGGTAGACAAAATTCTCTCTGTTTTCTATACCATCTTCACTCCC TTTCTGAATCCACTTATCTATACTTTGAGAAACCAGGAAGTGAAGACAGCAATGAAGAAG AAACTGAATATTCAGTATTTCAGTCTTGGGAAA |
| Conceptual translation |
MEGFNYSRVSEFMLLGLTDSPELQIFFFVVFSVFYLMTMLGNCLILLTVLSTSHLHSRTY FLLSNLS\DMCLSSFATPKMIMDFFALRKTISFEGCISQIFFLHLFNGTEIVLLISMSF DRYIAICKPLRYSTIMSQRVCVELVAVSCWTVGFLHTMSQLVFP/YLPFCVPNVVDSFF CDLPLVIQLACIDIYVLGTSMISTSGVTALTSFLLLLTSYIIVLNTIRDYSSTGSSKALS TCTAHFIVVLMFFGPCIFIYVWPSTNFLVDKILSVFYTIFTPFLNPLIYTLRNQEVKTAM KKKLNIQYFSLGK Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 21 | 14,953,600 | 14,953,600 | SNP | T/C | rs71362470 (DbSNP) | |
| 21 | 14,953,653 | 14,953,653 | SNP | C/T | rs2849101 (DbSNP) | |
| 21 | 14,953,782 | 14,953,782 | SNP | A/G | rs7282746 (DbSNP) | |
| 21 | 14,953,843 | 14,953,843 | SNP | A/G | rs8128504 (DbSNP) | |
| 21 | 14,954,256 | 14,954,256 | SNP | A/G | rs12329836 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 21 | 14,369,207 | 15,152,897 | CopyNumber | Variation_8890 (DGV), Variation_34632 (DGV) |
| 21 | 14,369,207 | 15,336,787 | CopyNumber | Variation_9322 (DGV) |
| 21 | 14,432,699 | 15,336,787 | CopyNumber | Variation_3225 (DGV) |
| 21 | 14,594,235 | 15,148,133 | CopyNumber | Variation_38448 (DGV) |
| 21 | 14,634,532 | 15,339,752 | CopyNumber | Variation_4110 (DGV) |
| 21 | 14,640,400 | 15,028,535 | CopyNumber | Variation_50729 (DGV) |
| 21 | 14,640,400 | 15,105,485 | CopyNumber | Variation_50730 (DGV) |
| 21 | 14,640,400 | 15,173,846 | CopyNumber | Variation_10591 (DGV) |
| 21 | 14,691,329 | 14,969,929 | CopyNumber | Variation_8891 (DGV) |
| 21 | 14,768,343 | 14,973,902 | CopyNumber | Variation_9828 (DGV) |
| 21 | 14,910,018 | 15,073,331 | CopyNumber | Variation_0811 (DGV), Variation_2255 (DGV) |
| 21 | 14,930,986 | 15,103,202 | CopyNumber | Variation_73606 (DGV) |
| 21 | 14,943,339 | 15,105,485 | CopyNumber | Variation_50731 (DGV) |
| 21 | 14,948,229 | 14,968,469 | CopyNumber | Variation_31058 (DGV) |
| 21 | 14,951,393 | 14,954,425 | Deletion | #250 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.