OR4K4P Olfactory Receptor
| Gene Symbol | OR4K4P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | K |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR14-9, OR14-5, HsOR14.1.11P, ORL3705 |
| External Ids | HGNC: 14744 GeneBank: BK004625, BK004739, NG_002242 ORDB: ORL3705 |
| Build #39 labels | OR4K4P |
| Chromosomal location | 14:19,905,705-19,906,635 (+) |
| Cluster | 14@20b |
| Synteny | CLIC#32 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4K15 | 64.71% | 238 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4K15 | 69% | 227 |
| Mouse | Or4k15c | 66% | 235 |
| Rat | Or4k15 | 67% | 227 |
| Cow | OR4K56 | 86% | 238 |
| Orang | OR4K61P | 86% | 242 |
| Orang | OR4K54P | 88% | 234 |
| Horse | OR4K56P | 86% | 234 |
| Chimp | OR4K54P | 97% | 234 |
Sequence information
| Nucleotide sequence |
GCATTCAGTAGAGGATATGGTGCCATTCTCTATGAGGATTTCTGGCATTTTTCAAATCTT CATTTTACGGCTATCATCACCTTATCTACTAATATTCTGTACTGACATGTGTACCATTTC AGTTTACATATTCTCATATAGTAAAATGTTAACTGCAAGGGAATTTACCTCAAACCCAAA CCATTAACGTAACTTCAGAGACAATATGGATTAAGATTATCCATGATTTCCTTCATGAAC CCAAGACTATCTCCTTTGAGGGCTGCATGGCCCAGATATTCTTGTTCCATGTCTTTGCTG GTGGTGAGATGGTGCTCCTTGTAGCCATGGCATATGACATATATGTAGCCATATGCAAAC CTCTCCATTATGCAACCATCATGAACTTGTGCACATGTACAGGCCTAGTGGTAGGATCTT GGGTCACTGGAGTTATGCACTCCCTGAGCCAGTTAGCTTTCACTGTAAGTTTGCCCTTCT GTGGCCCAAACATAGTGGACAGTTATTATTGTGACCTTACTTTGGTCATCAAACTTGCCT GTACAGATACTTATATCCCTGAAGCGTTGATGCTTTTGGACAGTGGTCTTATGGGGGTGA CTTCATTTTGCTTTTGCTGATCTCCTACACGGTCATTCTGATTACTGTGCAGCGACCTTC CTCAGCAGGTATGGCCAAGGCTCGCAGCACTCTGACTGCCCACGTGACTGTGGTGACCCT GTTCTTTGGGCCTTGTATCTTCATCTATGCCTGGCCTTTCAGCAACTTACCAGTGGATAA CCTTTTGTCTGTATTCTCTACAGTTTTCACACCTATATTAAACCCCCTTATCTACACACT GAGAAACAAAGAGGTAAAATCAGCAATTCATAACCTGAAGACCCAGTATGTAACTTCCAG GCTGTCTTCCCAGCTCTCTCTCATAGGACCA |
| Conceptual translation |
AFSRGYGAILYEDFWHFSNLHFTAIITLSTNIL/LTCVPFQFTYSHIVKCXQGNLPQT QTINVTSETIWIKIIHDFLHEPKTISFEGCMAQIFLFHVFAGGEMVLLVAMAYDIYVAIC KPLHYATIMNLCTCTGLVVGSWVTGVMHSLSQLAFTVSLPFCGPNIVDSYYCDLTLVIKL ACTDTYIPEALMLLDSGLMGVTSF/LLLISYTVILITVQRPSSAGMAKARSTLTAHVTV VTLFFGPCIFIYAWPFSNLPVDNLLSVFSTVFTPILNPLIYTLRNKEVKSAIHNLKTQYV TSRLSSQLSLIGP Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 14 | 20,373,898 | 20,373,898 | SNP | A/C | rs6650490 (DbSNP) | |
| 14 | 20,374,645 | 20,374,645 | SNP | C/A | rs1780909 (DbSNP) | |
| 14 | 20,374,793 | 20,374,793 | SNP | T/C | rs1780908 (DbSNP) | |
| 14 | 19,906,486 | 19,906,486 | SNP | C/A | 1000GP (CEU, CHBJPT) | |
| 14 | 19,906,634 | 19,906,634 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 14 | 19,905,927 | 19,905,927 | SNP | A/G | 1000GP (CHBJPT) | |
| 14 | 19,906,270 | 19,906,270 | SNP | G/A | 1000GP (CHBJPT) | |
| 14 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 14 | 20,197,616 | 20,399,048 | CopyNumber | Variation_0316 (DGV) |
| 14 | 20,371,142 | 20,505,020 | CopyNumber | Variation_2175 (DGV) |
| 14 | 20,203,125 | 20,539,108 | CopyNumber | Variation_3036 (DGV) |
| 14 | 19,662,531 | 20,556,187 | CopyNumber | Variation_3929 (DGV) |
| 14 | 20,219,649 | 20,415,445 | CopyNumber | Variation_4826 (DGV) |
| 14 | 20,362,952 | 20,525,999 | CopyNumber | Variation_4827 (DGV) |
| 14 | 19,117,183 | 20,424,605 | CopyNumber | Variation_7028 (DGV) |
| 14 | 20,203,125 | 20,483,660 | CopyNumber | Variation_8762 (DGV) |
| 14 | 20,203,125 | 20,626,160 | CopyNumber | Variation_8763 (DGV) |
| 14 | 20,239,479 | 20,422,583 | CopyNumber | Variation_8764 (DGV) |
| 14 | 20,203,125 | 20,716,841 | CopyNumber | Variation_8765 (DGV) |
| 14 | 20,203,125 | 20,433,044 | CopyNumber | Variation_9234 (DGV) |
| 14 | 20,239,479 | 20,511,107 | CopyNumber | Variation_9235 (DGV) |
| 14 | 20,177,234 | 20,424,604 | CopyNumber | Variation_30648 (DGV) |
| 14 | 19,360,239 | 20,424,604 | CopyNumber | Variation_31953 (DGV) |
| 14 | 20,203,125 | 20,525,833 | CopyNumber | Variation_34547 (DGV) |
| 14 | 20,267,014 | 20,433,060 | CopyNumber | Variation_34563 (DGV) |
| 14 | 20,203,125 | 20,456,434 | CopyNumber | Variation_34575 (DGV) |
| 14 | 20,203,125 | 20,655,466 | CopyNumber | Variation_34656 (DGV) |
| 14 | 20,239,246 | 20,432,988 | CopyNumber | Variation_34659 (DGV) |
| 14 | 20,203,125 | 20,550,348 | CopyNumber | Variation_34660 (DGV) |
| 14 | 20,203,125 | 20,455,307 | CopyNumber | Variation_34664 (DGV) |
| 14 | 20,200,183 | 20,423,372 | CopyNumber | Variation_38951 (DGV) |
| 14 | 20,305,431 | 20,404,091 | CopyNumber | Variation_49301 (DGV) |
| 14 | 20,305,431 | 20,425,051 | CopyNumber | Variation_49302 (DGV), Variation_49303 (DGV) |
| 14 | 20,305,431 | 20,432,664 | CopyNumber | Variation_49304 (DGV) |
| 14 | 19,349,922 | 20,424,856 | CopyNumber | Variation_58655 (DGV) |
| 14 | 20,177,210 | 20,424,753 | CopyNumber | Variation_66584 (DGV) |
| 14 | 19,781,170 | 20,424,776 | CopyNumber | Variation_71833 (DGV) |
| 14 | 20,289,680 | 20,425,312 | CopyNumber | Variation_71860 (DGV) |
| 14 | 20,152,622 | 20,419,574 | CopyNumber | Variation_76554 (DGV), Variation_87112 (DGV) |
| 14 | 20,326,958 | 20,419,574 | CopyNumber | Variation_76555 (DGV) |
| 14 | 20,283,374 | 20,419,574 | CopyNumber | Variation_76556 (DGV) |
| 14 | 20,299,695 | 20,419,574 | CopyNumber | Variation_87113 (DGV) |
| 14 | 20,348,406 | 20,398,665 | CopyNumber | Variation_101887 (DGV) |
| 14 | 20,373,764 | 20,376,794 | CopyNumber | #167 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.