OR4L1 Olfactory Receptor
Gene Symbol | OR4L11 (View this gene in GeneCards) |
Family | 4 |
Subfamily | L |
Pseudogene | No |
CORP pseudogene probability score | |
Aliases | OR14-28, HsOR14.1.20, ORL3688 |
External Ids | HGNC: 15356 GeneBank: AB065558, BK004467, NM_001004717 ORDB: ORL3688 |
Build #39 labels | OR4L1, OR4L2P |
Chromosomal location | 14:20,060,045-20,060,980 (+) |
Cluster | 14@20b |
Synteny | CLIC#32 |
Remarks | Segregating Pseudo Gene, a polymorphism of 19 bp del at positions 248-267 |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR4K15 | 58.06% | 310 |
OR4K16P | 59.09% | 308 |
OR4K3P | 61.46% | 301 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR4L3P | 75% | 315 |
Mouse | Or4l1 | 80% | 307 |
Rat | Or4l1 | 80% | 307 |
Cow | OR4L18 | 80% | 308 |
Orang | OR4L17P | 62% | 312 |
Horse | OR4L16P | 67% | 311 |
Chimp | OR4L1P | 97% | 213 |
Sequence information
Nucleotide sequence |
ATGGATCTTAAAAATGGATCTCTAGTGACCGAGTTTATTTTACTAGGATTTTTTGGACGA TGGGAACTTCAAATTTTCTTCTTTGTGACATTTTCCCTGATCTACGGTGCTACTGTGATG GGAAACATTCTCATTATGGTCACAGTGACATGTAGGTCAACCCTTCATTCTCCCTTGTAC TTTCTCCTTGGAAATCTCTCTTTTTTGGACATGTGTCTCTCCACTGCCACAACACCCAAG ATGATCATAGATTTGCTCACTGACCACAAGACCATCTCTGTGTGGGGCTGCGTGACCCAG ATGTTCTTCATGCACTTCTTTGGGGGTGCTGAGATGACTCTTCTGATAATCATGGCCTTT GACAGGTATGTAGCCATATGTAAACCCCTGCACTATAGGACAATCATGAGCCACAAGCTG CTAAAGGGGTTTGCGATACTTTCATGGATAATTGGTTTTTTACACTCCATAAGCCAGATA GTTTTAACAATGAACTTGCCTTTCTGTGGCCACAATGTCATAAACAACATATTTTGTGAT CTTCCCCTTGTGATCAAGCTTGCTTGCATTGAAACATACACCCTGGAATTATTTGTCATT GCTGACAGCGGGCTGCTCTCTTTCACCTGTTTCATCCTCTTGCTTGTTTCTTACATTGTC ATCCTGGTCAGTGTACCAAAAAAATCATCACATGGGCTCTCCAAGGCGCTGTCCACATTG TCTGCCCACATCATTGTGGTCACTCTGTTCTTTGGACCTTGTATTTTTATCTATGTTTGG CCATTCAGTAGTTTGGCAAGCAATAAAACTCTTGCCGTATTTTATACAGTTATCACACCC TTACTGAATCCGAGTATTTATACCCTGAGAAATAAGAAAATGCAAGAGGCCATAAGAAAA TTACGGTTCCAATATGTTAGTTCTGCACAGAATTTC |
Conceptual translation |
MDLKNGSLVTEFILLGFFGRWELQIFFFVTFSLIYGATVMGNILIMVTVTCRSTLHSPLY FLLGNLSFLDMCLSTATTPKMIIDLLTDHKTISVWGCVTQMFFMHFFGGAEMTLLIIMAF DRYVAICKPLHYRTIMSHKLLKGFAILSWIIGFLHSISQIVLTMNLPFCGHNVINNIFCD LPLVIKLACIETYTLELFVIADSGLLSFTCFILLLVSYIVILVSVPKKSSHGLSKALSTL SAHIIVVTLFFGPCIFIYVWPFSSLASNKTLAVFYTVITPLLNPSIYTLRNKKMQEAIRK LRFQYVSSAQNF Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
14 | 20,528,451 | 20,528,469 | Del(19) | -/TAGATTTGCTCACTGACCA | rs33965693 (DbSNP) | |
14 | 20,528,398 | 20,528,399 | Del(2) | -/TC | rs33977614 (DbSNP) | |
14 | 20,528,751 | 20,528,750 | Ins(1) | -/C | rs35605617 (DbSNP) | |
14 | 20,528,321 | 20,528,321 | NS | A/G | M/V | rs1958716 (DbSNP) |
14 | 20,528,207 | 20,528,207 | NS | A/G | N/D | rs1958715 (DbSNP) |
14 | 20,528,528 | 20,528,528 | NS | A/G | S/G | rs2775254 (DbSNP) |
14 | 20,528,790 | 20,528,790 | NS | A/T | E/V | rs45439600 (DbSNP) |
14 | 20,528,505 | 20,528,505 | NS | A/T | K/M | rs2775253 (DbSNP) |
14 | 20,528,481 | 20,528,481 | NS | C/T | S/F | rs10139756 (DbSNP) |
14 | 20,528,682 | 20,528,682 | NS | C/T | T/I | rs45585336 (DbSNP) |
14 | 20,528,250 | 20,528,250 | NS | G/T | G/V | rs45584133 (DbSNP) |
14 | 20,528,359 | 20,528,359 | NS | T/G | S/R | rs1959630 (DbSNP) |
14 | 20,528,527 | 20,528,527 | SYN | A/G | G/G | rs10130629 (DbSNP) |
14 | 20,528,362 | 20,528,362 | SYN | A/G | S/S | rs1958717 (DbSNP) |
14 | 20,529,043 | 20,529,043 | SYN | C/G | P/P | rs1959628 (DbSNP) |
14 | 20,528,308 | 20,528,308 | SYN | C/T | Y/Y | rs10139558 (DbSNP) |
14 | 20,529,019 | 20,529,019 | SYN | T/C | A/A | rs1959629 (DbSNP) |
14 | 20,060,860 | 20,060,860 | SYN | C/T | A/A | 1000GP (CEU, CHBJPT) |
14 | 20,060,346 | 20,060,346 | NS | T/A | M/K | 1000GP (CEU, CHBJPT) |
14 | 20,060,048 | 20,060,048 | NS | G/A | D/N | 1000GP (CEU, CHBJPT) |
14 | 20,060,884 | 20,060,884 | SYN | C/G | P/P | 1000GP (CEU, CHBJPT) |
14 | 20,060,369 | 20,060,369 | NS | G/A | G/S | 1000GP (CEU, CHBJPT) |
14 | 20,060,200 | 20,060,200 | NS | G/T | R/S | 1000GP (CEU) |
14 | 20,060,203 | 20,060,203 | SYN | A/G | S/S | 1000GP (CEU, CHBJPT) |
14 | 20,060,523 | 20,060,523 | NS | T/C | I/T | 1000GP (CEU, CHBJPT) |
14 | 20,060,091 | 20,060,091 | NS | G/T | G/V | 1000GP (CEU, CHBJPT) |
14 | 20,060,162 | 20,060,162 | NS | A/G | M/V | 1000GP (CEU, CHBJPT) |
14 | 100 | -100 | NS | G/A | D/N | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
14 | 100 | -100 | SYN | A/G | S/S | 1000GP (YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
14 | 20,203,125 | 20,539,108 | CopyNumber | Variation_3036 (DGV) |
14 | 19,662,531 | 20,556,187 | CopyNumber | Variation_3929 (DGV) |
14 | 20,203,125 | 20,626,160 | CopyNumber | Variation_8763 (DGV) |
14 | 20,203,125 | 20,716,841 | CopyNumber | Variation_8765 (DGV) |
14 | 20,521,060 | 20,539,305 | CopyNumber | Variation_9724 (DGV), Variation_49305 (DGV) |
14 | 20,528,207 | 20,539,305 | CopyNumber | Variation_9725 (DGV) |
14 | 20,520,445 | 20,540,967 | CopyNumber | Variation_30649 (DGV) |
14 | 20,203,125 | 20,655,466 | CopyNumber | Variation_34656 (DGV) |
14 | 20,203,125 | 20,550,348 | CopyNumber | Variation_34660 (DGV) |
14 | 20,521,435 | 20,539,362 | CopyNumber | Variation_37686 (DGV) |
14 | 20,521,060 | 20,562,080 | CopyNumber | Variation_49306 (DGV) |
14 | 20,524,593 | 20,528,461 | CopyNumber | Variation_66585 (DGV) |
14 | 20,520,220 | 20,540,382 | CopyNumber | Variation_76566 (DGV) |
14 | 20,528,104 | 20,531,139 | CopyNumber | #140 (Waszak) |
14 | 20,528,417 | 20,528,651 | Del(-19) | #21(modil) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
D2N | G16V | G36S | M40V | R52S | S93P | S93F | M101K | G109S | A119T | S156T | I160T | E196A | E296K | % Freq | CORP | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | D | G | G | M | S | S | S | M | G | A | S | I | E | E | 47.16 | 0.742 |
2 | N | G | G | V | S | S | S | K | S | A | S | I | E | E | 38.71 | 0.742 |
3 | N | V | G | V | S | S | S | M | G | A | S | T | E | E | 4.99 | 0.742 |
4 | D | G | G | M | R | S | S | M | G | A | S | I | E | E | 3.07 | 0.742 |
5 | N | G | G | V | S | S | S | M | G | A | S | I | E | E | 1.92 | 0.742 |
6 | N | G | G | V | S | S | S | M | G | A | S | T | E | E | 0.92 | 0.742 |
7 | N | G | G | V | S | P | S | K | S | A | S | I | E | E | 0.69 | 0.742 |
8 | D | G | G | M | S | S | S | M | G | T | S | I | E | E | 0.46 | 0.814 |
9 | N | G | G | M | S | S | S | M | G | A | S | I | E | E | 0.31 | 0.742 |
10 | N | G | G | V | S | S | S | K | S | A | S | I | A | E | 0.31 | 0.742 |
11 | N | G | S | V | S | S | S | K | S | A | S | I | E | E | 0.23 | 0.742 |
12 | D | G | G | M | S | S | S | M | G | A | T | I | E | E | 0.15 | 0.742 |
13 | N | G | G | V | S | S | S | K | S | A | S | I | E | K | 0.15 | 0.742 |
14 | D | G | G | V | S | S | S | M | G | A | S | T | E | E | 0.15 | 0.742 |
15 | D | G | G | M | S | S | F | M | G | A | T | I | E | E | 0.15 | 0.742 |
16 | N | V | G | V | S | S | S | M | G | A | S | I | E | E | 0.15 | 0.742 |
17 | D | G | G | M | S | P | S | M | G | A | S | I | E | E | 0.08 | 0.742 |
18 | D | G | S | M | S | S | S | M | G | A | S | I | E | E | 0.08 | 0.742 |
19 | N | G | G | V | S | S | S | K | G | A | S | I | E | E | 0.08 | 0.742 |
20 | D | G | G | V | S | S | S | K | S | A | S | I | E | E | 0.08 | 0.742 |
21 | N | V | G | V | S | S | S | K | S | A | S | I | E | E | 0.08 | 0.742 |
22 | N | G | G | M | S | S | S | M | G | A | T | I | E | E | 0.08 | 0.742 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR4L1.aApr07-unspliced | main_exon | CDS | chr14 | 20,060,045 | 20,060,980 | + |
3UTR | chr14 | 20,060,980 | 20,060,983 | + |