OR4N1P Olfactory Receptor
| Gene Symbol | OR4N1P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | N |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR14-12, OR14-6, HsOR14.1.6P, ORL3704 |
| External Ids | HGNC: 14740 GeneBank: BK004696, BK004715, NG_002243 ORDB: ORL3704 |
| Build #39 labels | OR4N1P |
| Chromosomal location | 14:19,796,336-19,797,284 (+) |
| Cluster | 14@20b |
| Synteny | CLIC#32 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4N4 | 93.95% | 314 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4N2B | 87% | 308 |
| Dog | OR4N2 | 86% | 301 |
| Mouse | Or4n4 | 84% | 308 |
| Rat | Or4n5 | 81% | 308 |
| Rat | Or4n4 | 81% | 308 |
| Cow | OR4N2C | 88% | 306 |
| Cow | OR4N4 | 86% | 304 |
| Cow | OR4N2 | 85% | 302 |
| Orang | OR4N2 | 86% | 302 |
| Orang | OR4N5 | 83% | 308 |
| Horse | OR4N2F | 88% | 308 |
| Horse | OR4N2D | 86% | 302 |
| Horse | OR4N2 | 86% | 301 |
| Chimp | OR4N2 | 88% | 302 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h05681_s_at |
| GNF Atlas2 | gnf1h07263_x_at |
Sequence information
| Nucleotide sequence |
GCAGAAGAAATAAAGATAGCAAACAACACAGTAGTGACAGAATTTATCCTCCTTGGTCTG ACTCAGTCTCAAGATATTCAGCTCTTGGTCTTTGTGCTGATCTTAATTTTCTACCTTATC ATCCTCCCTGGAAATTTCCTCATCATTTTCACCATAAAGTCAGATCCTGGGCTCACAGCA CCCCTCTATTTCTTTCTGGGCAACTTGGCCTTCCTGGATGCATCCTACTCCTTCATTGTG GCTCCCCGGATGTTGGTGGACTTCCTCTCTGCGAAGAATGTAATCTCCTACAGAGGCTGC ATCACTCAGCTCTTTTTCTTGCACTTCCTTGGAGGAGGAGAGGGATTACTCCTTGTGATG TAGCCTTTGACCGCTACATCGCCATCTGCCGGCCTCTGCACTATTCTACTCTCATGAACC CCAGAGCTTGCTATGCAATGATGTTGGCTCTGTGGCTTGGGGGTTTTGTCCACTCCATTA TCCAGGTGGTCCTCATCCTCCGCTTGCCTTTTTGTGGCCCAAACCAGCTGGACAACTTCT TCTGTGATGTCCCACAGGTCATCAAGCTGGCTTGCACCGACACGTTTGTGGTGGAGCTTC TGATGGTCTTCAACAGTGGCCTGATGACACTCCTGTCTTTCTGGGGCTTCTGGCTTCCTA TGCAGTCATCCTGTGCCATGTTCGTAAGGCAGCTTCTGAATTGAAGAACAAGGCCATGTC CACGTGCACCACTCATGTCATTATTATACTTCTTATGTTTGGACCTGCTATCTTCATCTA CATGCACCCCTTCAGGGCCTTACCAGCTGACAAGGTGGTTTCTTTCTTTCACACAGTGAT CTTTCCATTGATGAATCCTATGATTTATACCCTTGGAAACCAGGAAGTGAAAACTTCCAT GAAGAGGTTATTGAGTCGACATGTAGTCTGTCAAGTGGACTTTATAATA |
| Conceptual translation |
AEEIKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIKSDPGLTA PLYFFLGNLAFLDASYSFIVAPRMLVDFLSAKNVISYRGCITQLFFLHFLGGGEGLLLV/br/>SVAFDRYIAICRPLHYSTLMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDN FFCDVPQVIKLACTDTFVVELLMVFNSGLMTLL/FLGLLASYAVILCHVRKAASELKNK AMSTCTTHVIIILLMFGPAIFIYMHPFRALPADKVVSFFHTVIFPLMNPMIYTLGNQEVK TSMKRLLSRHVVCQVDFII Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 14 | 20,264,674 | 20,264,674 | SNP | A/C | rs60978345 (DbSNP) | |
| 14 | 20,264,912 | 20,264,912 | SNP | A/G | rs17114258 (DbSNP) | |
| 14 | 20,265,201 | 20,265,201 | SNP | A/G | rs17276836 (DbSNP) | |
| 14 | 20,264,506 | 20,264,506 | SNP | A/G | rs61031795 (DbSNP) | |
| 14 | 20,265,265 | 20,265,265 | SNP | A/T | rs12100572 (DbSNP) | |
| 14 | 20,265,369 | 20,265,369 | SNP | C/G | rs2489769 (DbSNP) | |
| 14 | 20,264,665 | 20,264,665 | SNP | C/G | rs58495514 (DbSNP) | |
| 14 | 20,265,145 | 20,265,145 | SNP | C/T | rs61480880 (DbSNP) | |
| 14 | 20,264,814 | 20,264,814 | SNP | G/T | rs72663723 (DbSNP) | |
| 14 | 19,796,516 | 19,796,516 | SNP | C/. | 1000GP (CEU, CHBJPT) | |
| 14 | 19,797,042 | 19,797,042 | SNP | A/G | 1000GP (CEU, CHBJPT) | |
| 14 | 19,797,106 | 19,797,106 | SNP | T/A | 1000GP (CEU) | |
| 14 | 100 | -100 | SNP | C/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 14 | 20,197,616 | 20,399,048 | CopyNumber | Variation_0316 (DGV) |
| 14 | 20,203,125 | 20,539,108 | CopyNumber | Variation_3036 (DGV) |
| 14 | 19,662,531 | 20,556,187 | CopyNumber | Variation_3929 (DGV) |
| 14 | 20,080,166 | 20,271,356 | CopyNumber | Variation_4824 (DGV) |
| 14 | 20,219,649 | 20,415,445 | CopyNumber | Variation_4826 (DGV) |
| 14 | 19,117,183 | 20,424,605 | CopyNumber | Variation_7028 (DGV) |
| 14 | 20,203,125 | 20,483,660 | CopyNumber | Variation_8762 (DGV) |
| 14 | 20,203,125 | 20,626,160 | CopyNumber | Variation_8763 (DGV) |
| 14 | 20,239,479 | 20,422,583 | CopyNumber | Variation_8764 (DGV) |
| 14 | 20,203,125 | 20,716,841 | CopyNumber | Variation_8765 (DGV) |
| 14 | 20,203,125 | 20,433,044 | CopyNumber | Variation_9234 (DGV) |
| 14 | 20,239,479 | 20,511,107 | CopyNumber | Variation_9235 (DGV) |
| 14 | 20,177,234 | 20,424,604 | CopyNumber | Variation_30648 (DGV) |
| 14 | 19,360,239 | 20,424,604 | CopyNumber | Variation_31953 (DGV) |
| 14 | 20,203,125 | 20,525,833 | CopyNumber | Variation_34547 (DGV) |
| 14 | 20,203,125 | 20,456,434 | CopyNumber | Variation_34575 (DGV) |
| 14 | 20,203,125 | 20,655,466 | CopyNumber | Variation_34656 (DGV) |
| 14 | 20,239,246 | 20,432,988 | CopyNumber | Variation_34659 (DGV) |
| 14 | 20,203,125 | 20,550,348 | CopyNumber | Variation_34660 (DGV) |
| 14 | 20,203,125 | 20,455,307 | CopyNumber | Variation_34664 (DGV) |
| 14 | 19,670,757 | 20,331,117 | CopyNumber | Variation_37621 (DGV) |
| 14 | 20,200,183 | 20,423,372 | CopyNumber | Variation_38951 (DGV) |
| 14 | 19,349,922 | 20,424,856 | CopyNumber | Variation_58655 (DGV) |
| 14 | 20,177,210 | 20,424,753 | CopyNumber | Variation_66584 (DGV) |
| 14 | 20,255,784 | 20,265,670 | CopyNumber | Variation_71831 (DGV) |
| 14 | 19,781,170 | 20,424,776 | CopyNumber | Variation_71833 (DGV) |
| 14 | 20,263,747 | 20,314,312 | CopyNumber | Variation_71834 (DGV) |
| 14 | 20,198,061 | 20,307,453 | CopyNumber | Variation_71859 (DGV) |
| 14 | 20,152,622 | 20,419,574 | CopyNumber | Variation_76554 (DGV), Variation_87112 (DGV) |
| 14 | 20,185,336 | 20,310,638 | CopyNumber | Variation_76557 (DGV) |
| 14 | 20,201,654 | 20,343,302 | CopyNumber | Variation_87118 (DGV) |
| CopyNumber | 196 (Hasin) | |||
| 14 | 20,264,395 | 20,267,443 | CopyNumber | #156 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.