OR4N3P Olfactory Receptor
| Gene Symbol | OR4N3P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | N |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR15-2, HsOR15.1.10P, ORL3728 |
| External Ids | HGNC: 15374 GeneBank: AB065654, AB065905, BK004787, NG_004355 ORDB: ORL3728 |
| Build #39 labels | OR4N3P |
| Chromosomal location | 15:22,125,511-22,126,431 (+) |
| Cluster | 15@22 |
| Synteny | CLIC#32 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4N2 | 91.86% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4N2 | 87% | 307 |
| Mouse | Or4n4 | 80% | 306 |
| Rat | Or4n4 | 78% | 306 |
| Cow | OR4N2 | 84% | 307 |
| Orang | OR4N2 | 92% | 307 |
| Horse | OR4N2D | 87% | 307 |
| Horse | OR4N2 | 85% | 307 |
| Chimp | OR4N2 | 93% | 307 |
Expression evidences
| Source | Accession |
|---|---|
| ESTs | BX114189 |
| GNF Atlas2 | gnf1h02895_at |
| GNF Atlas2 | gnf1h02896_s_at |
Sequence information
| Nucleotide sequence |
ATGGAAAGCGAGAACAGAACAGTGATAAGAGAATTCATCCTCCTTCGTTTGACCCAGTTT CGAGATATTTAGCTCCTGGTCTTTGTGCTAGTTTTAATATTCTACTTCTTCATCCTCCCT GGAAATTTTCTCATTATTTTCACCATAAGGTCAGACCCTGGGCTCACAGCCCCCCTCTAT TTATTTCTGGGCAACTTGGCCTTCCTGGATGCATCCTACTCCTTCATTGTGGCTCCCAAG ATGTTGGTGGACTTCCTCTCTGAGAAGAAGGTAATCTCCTACAGAGGCTGCATCACTCAG CTCTTTTTCTTGCACTTCCTTGGAGGAGGGGAGGGATTACTCCTTGTTGTGATGGCCTTT GACCGCTACATCACCATCTGCCTGCCTCTGCAGTATTCAACTGTCATGAACTCTAGAGCC TGCTATGCAATGATGTTGGCTCTGTGGCTTGGGGGTTTTGTCCACTCCATTATCCAGGTG GTCCTCATCATCCGCTTGCCTTTTTGTGGCCCAAACCAGCTGGACAACTTCTTCTGTGAT GTCCGACAGGTCATCAAGCTGGCTTGCACCGACATGTTTGTGGTGGAGCTTCTGATGGTC TTCAATAGTGGCCTGATGACACTCATGTGCTTTCTGGGACTTCTGGCCTCCTATGCAGTC ATTCTTTGTCGCATACGAGCGTCTTCTTCTGAGGCAAAAAACAAGGCCATGTCCACATGC ACCACCCATATCATTGTTATATTCTTCATGTTTGGACCTGGCATCTTCATCTACACGTGC CCCTTCAGGGCTTTCCCAGCCGACAAGGTGGTTTCTCTCTTCCACACAGTGATTCTTCCT TTGTTGAATCCTGTCATTTATACCCTTCATAACCAGGAAGTGAAAGCTTCCATGAAAAAG GTGTTTAATAAACACATAGCC |
| Conceptual translation |
MESENRTVIREFILLRLTQFRDIXLVFVLVLIFYFFILPGNFLIIFTIRSDPGLTAPLY LFLGNLAFLDASYSFIVAPKMLVDFLSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAF DRYITICLPLQYSTVMNSRACYAMMLALWLGGFVHSIIQVVLIIRLPFCGPNQLDNFFCD VRQVIKLACTDMFVVELLMVFNSGLMTLMCFLGLLASYAVILCRIRASSSEAKNKAMSTC TTHIIVIFFMFGPGIFIYTCPFRAFPADKVVSLFHTVILPLLNPVIYTLHNQEVKASMKK VFNKHIA Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 15 | 100 | -100 | SNP | G/A | 1000GP (YRI, YRI, YRI, YRI) | |
| 15 | 22,125,874 | 22,125,874 | SNP | C/T | 1000GP (CEU) | |
| 15 | 22,125,893 | 22,125,893 | SNP | T/G | 1000GP (CHBJPT) | |
| 15 | 22,126,003 | 22,126,003 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 15 | 22,126,311 | 22,126,311 | SNP | C/T | 1000GP (CEU) | |
| 15 | 22,413,632 | 22,413,632 | SNP | C/T | rs72687721 (DbSNP) | |
| 15 | 22,413,700 | 22,413,700 | SNP | A/G | rs267612 (DbSNP) | |
| 15 | 22,413,825 | 22,413,825 | SNP | C/T | rs267613 (DbSNP) | |
| 15 | 22,413,940 | 22,413,940 | SNP | C/T | rs7167256 (DbSNP) | |
| 15 | 22,413,954 | 22,413,954 | SNP | C/T | rs1810247 (DbSNP) | |
| 15 | 22,414,005 | 22,414,005 | SNP | C/T | rs59278647 (DbSNP) | |
| 15 | 22,414,190 | 22,414,190 | SNP | C/T | rs28695837 (DbSNP) | |
| 15 | 22,414,244 | 22,414,244 | SNP | C/T | rs61154769 (DbSNP) | |
| 15 | 22,414,262 | 22,414,262 | SNP | T/C | rs1429510 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 15 | 20,003,725 | 23,814,757 | CopyNumber | Variation_3951 (DGV) |
| 15 | 20,143,651 | 23,690,892 | CopyNumber | Variation_3070 (DGV) |
| 15 | 20,161,372 | 22,449,059 | CopyNumber | Variation_49468 (DGV), Variation_49469 (DGV) |
| 15 | 20,161,372 | 22,755,185 | CopyNumber | Variation_49470 (DGV) |
| 15 | 20,161,372 | 23,226,254 | CopyNumber | Variation_49471 (DGV) |
| 15 | 20,167,086 | 22,588,036 | CopyNumber | Variation_8779 (DGV) |
| 15 | 20,167,086 | 22,862,959 | CopyNumber | Variation_34576 (DGV) |
| 15 | 20,167,086 | 22,869,764 | CopyNumber | Variation_8781 (DGV) |
| 15 | 20,167,086 | 23,222,284 | CopyNumber | Variation_9251 (DGV), Variation_34504 (DGV) |
| 15 | 20,167,086 | 23,854,707 | CopyNumber | Variation_8784 (DGV) |
| 15 | 20,167,089 | 22,588,036 | CopyNumber | Variation_9250 (DGV) |
| 15 | 20,167,089 | 22,869,763 | CopyNumber | Variation_34665 (DGV) |
| 15 | 20,167,089 | 23,222,284 | CopyNumber | Variation_34608 (DGV) |
| 15 | 20,171,787 | 22,646,418 | CopyNumber | Variation_31980 (DGV) |
| 15 | 20,198,198 | 22,591,284 | CopyNumber | Variation_30670 (DGV) |
| 15 | 20,266,957 | 22,674,466 | CopyNumber | Variation_0318 (DGV) |
| 15 | 20,397,403 | 22,698,551 | CopyNumber | Variation_7046 (DGV) |
| 15 | 20,422,586 | 22,588,019 | CopyNumber | Variation_34663 (DGV) |
| 15 | 20,610,110 | 22,575,858 | Inversion | Variation_0443 (DGV) |
| 15 | 20,625,544 | 22,559,977 | Inversion | Variation_0444 (DGV) |
| 15 | 20,851,594 | 22,588,036 | CopyNumber | Variation_34545 (DGV) |
| 15 | 20,852,150 | 23,222,284 | CopyNumber | Variation_8785 (DGV) |
| 15 | 20,879,638 | 22,777,875 | CopyNumber | Variation_9254 (DGV) |
| 15 | 20,935,075 | 22,777,875 | CopyNumber | Variation_8783 (DGV) |
| 15 | 21,012,524 | 23,222,284 | CopyNumber | Variation_9256 (DGV) |
| 15 | 21,054,356 | 22,453,425 | CopyNumber | Variation_76814 (DGV), Variation_87462 (DGV) |
| 15 | 21,072,035 | 22,588,019 | CopyNumber | Variation_34607 (DGV) |
| 15 | 21,097,124 | 22,449,059 | CopyNumber | Variation_9742 (DGV) |
| 15 | 21,200,251 | 22,588,036 | CopyNumber | Variation_8786 (DGV) |
| 15 | 21,276,422 | 22,453,425 | CopyNumber | Variation_87468 (DGV) |
| 15 | 21,362,809 | 22,453,425 | CopyNumber | Variation_76815 (DGV) |
| 15 | 22,262,145 | 22,453,425 | CopyNumber | Variation_76813 (DGV) |
| 15 | 22,262,185 | 22,596,129 | CopyNumber | Variation_72162 (DGV) |
| 15 | 22,265,649 | 22,591,752 | CopyNumber | Variation_37535 (DGV), Variation_37626 (DGV) |
| 15 | 22,286,537 | 22,453,425 | CopyNumber | Variation_87461 (DGV) |
| 15 | 22,302,006 | 22,588,022 | CopyNumber | Variation_38952 (DGV) |
| 15 | 22,304,940 | 22,427,590 | CopyNumber | Variation_72152 (DGV) |
| 15 | 22,307,069 | 22,474,088 | CopyNumber | Variation_2182 (DGV) |
| 15 | 22,320,036 | 22,588,036 | CopyNumber | Variation_8782 (DGV), Variation_34557 (DGV) |
| 15 | 22,320,057 | 22,588,019 | CopyNumber | Variation_9249 (DGV), Variation_34643 (DGV) |
| 15 | 22,320,057 | 22,777,875 | CopyNumber | Variation_9252 (DGV) |
| 15 | 22,348,218 | 22,544,992 | CopyNumber | Variation_4873 (DGV) |
| 15 | 22,351,239 | 22,449,059 | CopyNumber | Variation_9741 (DGV), Variation_10464 (DGV) |
| 15 | 22,372,924 | 22,453,425 | CopyNumber | Variation_87464 (DGV) |
| 15 | 22,383,638 | 22,596,129 | CopyNumber | Variation_72164 (DGV) |
| 15 | 22,383,746 | 22,452,236 | CopyNumber | Variation_72154 (DGV) |
| 15 | 22,385,251 | 22,596,193 | CopyNumber | Variation_58703 (DGV) |
| 15 | 22,413,362 | 22,416,382 | CopyNumber | #170 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR4N3P.aApr07-unspliced | main_exon | CDS_partial | chr15 | 22,125,679 | 22,126,431 | + |
| 3UTR | chr15 | 22,126,431 | 22,126,447 | + | ||