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(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR4P1P Olfactory Receptor

Gene Symbol OR4P1P1 (View this gene in GeneCards)
Family 4
Subfamily P
Pseudogene Yes
CORP pseudogene probability score
Aliases OR11-139, HsOR11.11.21P, ORL3485
External Ids HGNC: 14754   GeneBank: AB065518, BK004578, NG_002236   ORDB: ORL3485   
Build #39 labels OR4P1P
Chromosomal location 11:55,683,343-55,684,269 (+)
Cluster 11@56
Synteny CLIC#26
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR4P4 73.7% 308

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR4P4C 75% 309
Mouse Or4p4 71% 309
Rat Or4p4 70% 309
Cow OR4P7 64% 302
Orang OR4X2P 48% 300
Horse OR4P65P 72% 305
Chimp OR4P4 73% 309

Expression evidences

Source Accession
ESTs AW182678
mRNA AB529257

Sequence information

Nucleotide sequence ATGGAAAATAGGAATATTGTCACTGTCTTTATTCTCCTGGGACTTTCTCAAAACAAGAAC
ATTGAAGTTTTTTGGTTTGTATTATTTGTATTTTGCTACATTGCTATTTGGATGGAAAAC
TTCATCATAATGATTTCTATCATGTACATTTAGCTAATTGACCAACCCATGTATTTCTTC
CTTAATTACCTCGCACTCTCAGATCTTTGCTACATATCCACTGTGGCCCCCAAGCTAATG
ATTGACCTACTAACAGAAAGGAAGATCGTTTCCTATAATAACTGCATGATACAGCTATTT
ATCACTCACTTCCTTGGAGACATTGAGATCTTCATACTCAAAGCAATGGCCTATGACCAC
TACATAGCCATCTGCAAGCACCTGCACTACACCATCATCACGACCAAGCAAAGCTGTAAC
ACCATCATCATAGCTTGTTGTACTGGGGGATTTATACACTCTGCCAGTCAGTTTCTTCTT
ACCATCTTCTTACCGTTCTGTGGTCTTAATGAGATAGATCAGTACTTCTGCTATGTGTAT
CCTCTGCTGAAGTTGGCTCGCATTGATATATACAGAATTGGTTTCTTGGTAATTGTTAAT
TCAGGCCTGATTTCTTTGTTGGCTTTTGTGATTTTGATGGTGTCTTATTATTTGATATTA
TCCACCATCAGGGTTTACTCTGCTGAGAGTCATACCAAAGCTCTTTCAACCTGTAGCTCT
CACATAATAGTTGTGGTCCTATTCTTTGTGCCTGCCCTCTTCATTTACATCAGACCAGCC
ATAACTTTTCCAGAAGATAAAGTGTTTGTTCTCTTCTGTGCCATCATTGCTCCCATGTTC
AGTCTTCTTATCTACATGCTGAGAAAGGTGGAGATGAAGAACGCTGTAAGGAAAATGTGG
TGTCATCAATTGCTTCTGGCAAGGAAG
Conceptual translation MENRNIVTVFILLGLSQNKNIEVFWFVLFVFCYIAIWMENFIIMISIMYIXIDQPMYFF
LNYLALSDLCYISTVAPKLMIDLLTERKIVSYNNCMIQLFITHFLGDIEIFILKAMAYDH
YIAICKHLHYTIITTKQSCNTIIIACWTGGFIHSASQFLLTIFLPFCGLNEIDQYFCYVY
PLLKLARIDIYRIGFLVIVNSGLISLLAFVILMVSYYLILSTIRVYSAESHTKALSTCSS
HIIVVVLFFVPALFIYIRPAITFPEDKVFVLFCAIIAPMFSLLIYMLRKVEMKNAVRKMW
CHQLLLARK

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 55,451,313 55,451,313 SNP A/G rs11230661 (DbSNP)
11 55,451,045 55,451,045 SNP C/T rs12789430 (DbSNP)
11 55,683,569 55,683,569 SNP C/T 1000GP (CEU, CHBJPT)
11 55,683,724 55,683,724 SNP C/A 1000GP (CEU)
11 55,683,837 55,683,837 SNP G/A 1000GP (CEU, CHBJPT)
11 55,684,225 55,684,225 SNP G/T 1000GP (CEU)
11 100 -100 SNP A/G 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
11 55,153,930 55,816,828 CopyNumber Variation_0308 (DGV)
11 55,359,025 55,470,359 CopyNumber Variation_0419 (DGV), Variation_34977 (DGV)
11 55,446,295 55,618,623 CopyNumber Variation_2167 (DGV)
11 55,339,702 55,638,112 CopyNumber Variation_2926 (DGV)
11 55,222,420 55,621,884 CopyNumber Variation_3852 (DGV)
11 55,382,681 55,548,038 CopyNumber Variation_4743 (DGV)
11 55,367,167 55,452,993 CopyNumber Variation_6923 (DGV)
11 54,835,623 55,879,426 CopyNumber Variation_8690 (DGV)
11 55,445,294 55,620,699 CopyNumber Variation_9187 (DGV)
11 55,377,006 55,620,699 CopyNumber Variation_9188 (DGV)
11 55,422,586 55,596,313 CopyNumber Variation_10360 (DGV)
11 55,371,020 55,460,788 CopyNumber Variation_29910 (DGV)
11 55,422,585 55,596,313 CopyNumber Variation_29911 (DGV)
11 55,367,884 55,459,183 CopyNumber Variation_31823 (DGV)
11 55,362,651 55,460,561 CopyNumber Variation_34978 (DGV)
11 55,432,955 55,495,323 Inversion Variation_37124 (DGV)
11 55,374,032 55,453,009 CopyNumber Variation_38079 (DGV)
11 55,445,869 55,457,755 CopyNumber Variation_41255 (DGV)
11 55,335,878 55,453,486 CopyNumber Variation_48051 (DGV)
11 55,381,588 55,474,194 CopyNumber Variation_48053 (DGV)
11 55,437,126 55,483,713 CopyNumber Variation_48054 (DGV)
11 55,422,490 55,475,200 CopyNumber Variation_48055 (DGV)
11 55,360,213 55,470,003 CopyNumber Variation_48828 (DGV)
11 55,371,021 55,460,095 CopyNumber Variation_48836 (DGV)
11 55,437,126 55,596,313 CopyNumber Variation_48840 (DGV)
11 55,442,368 55,596,313 CopyNumber Variation_48841 (DGV)
11 55,444,868 55,591,047 CopyNumber Variation_48842 (DGV)
11 55,444,868 55,596,313 CopyNumber Variation_48843 (DGV)
11 55,447,427 55,596,313 CopyNumber Variation_53429 (DGV)
11 55,360,213 55,490,377 CopyNumber Variation_53507 (DGV)
11 55,360,213 55,460,788 CopyNumber Variation_53994 (DGV)
11 55,360,213 55,470,994 CopyNumber Variation_54018 (DGV)
11 55,364,677 55,453,061 CopyNumber Variation_65955 (DGV)
11 55,422,345 55,603,590 CopyNumber Variation_65956 (DGV)
11 55,446,001 55,457,503 CopyNumber Variation_71330 (DGV)
11 55,366,131 55,452,023 CopyNumber Variation_75644 (DGV)
11 55,421,049 55,452,023 CopyNumber Variation_75645 (DGV)
11 55,422,701 55,509,962 CopyNumber Variation_85778 (DGV)
11 55,365,707 55,452,023 CopyNumber Variation_85779 (DGV)
Deletion 257 (Hasin)
11 55,450,719 55,453,745 Deletion #11 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

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