OR4P1P Olfactory Receptor
Gene Symbol | OR4P1P1 (View this gene in GeneCards) |
Family | 4 |
Subfamily | P |
Pseudogene | Yes |
CORP pseudogene probability score | |
Aliases | OR11-139, HsOR11.11.21P, ORL3485 |
External Ids | HGNC: 14754 GeneBank: AB065518, BK004578, NG_002236 ORDB: ORL3485 |
Build #39 labels | OR4P1P |
Chromosomal location | 11:55,683,343-55,684,269 (+) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR4P4 | 73.7% | 308 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR4P4C | 75% | 309 |
Mouse | Or4p4 | 71% | 309 |
Rat | Or4p4 | 70% | 309 |
Cow | OR4P7 | 64% | 302 |
Orang | OR4X2P | 48% | 300 |
Horse | OR4P65P | 72% | 305 |
Chimp | OR4P4 | 73% | 309 |
Expression evidences
Source | Accession |
---|---|
ESTs | AW182678 |
mRNA | AB529257 |
Sequence information
Nucleotide sequence |
ATGGAAAATAGGAATATTGTCACTGTCTTTATTCTCCTGGGACTTTCTCAAAACAAGAAC ATTGAAGTTTTTTGGTTTGTATTATTTGTATTTTGCTACATTGCTATTTGGATGGAAAAC TTCATCATAATGATTTCTATCATGTACATTTAGCTAATTGACCAACCCATGTATTTCTTC CTTAATTACCTCGCACTCTCAGATCTTTGCTACATATCCACTGTGGCCCCCAAGCTAATG ATTGACCTACTAACAGAAAGGAAGATCGTTTCCTATAATAACTGCATGATACAGCTATTT ATCACTCACTTCCTTGGAGACATTGAGATCTTCATACTCAAAGCAATGGCCTATGACCAC TACATAGCCATCTGCAAGCACCTGCACTACACCATCATCACGACCAAGCAAAGCTGTAAC ACCATCATCATAGCTTGTTGTACTGGGGGATTTATACACTCTGCCAGTCAGTTTCTTCTT ACCATCTTCTTACCGTTCTGTGGTCTTAATGAGATAGATCAGTACTTCTGCTATGTGTAT CCTCTGCTGAAGTTGGCTCGCATTGATATATACAGAATTGGTTTCTTGGTAATTGTTAAT TCAGGCCTGATTTCTTTGTTGGCTTTTGTGATTTTGATGGTGTCTTATTATTTGATATTA TCCACCATCAGGGTTTACTCTGCTGAGAGTCATACCAAAGCTCTTTCAACCTGTAGCTCT CACATAATAGTTGTGGTCCTATTCTTTGTGCCTGCCCTCTTCATTTACATCAGACCAGCC ATAACTTTTCCAGAAGATAAAGTGTTTGTTCTCTTCTGTGCCATCATTGCTCCCATGTTC AGTCTTCTTATCTACATGCTGAGAAAGGTGGAGATGAAGAACGCTGTAAGGAAAATGTGG TGTCATCAATTGCTTCTGGCAAGGAAG |
Conceptual translation |
MENRNIVTVFILLGLSQNKNIEVFWFVLFVFCYIAIWMENFIIMISIMYIXIDQPMYFF LNYLALSDLCYISTVAPKLMIDLLTERKIVSYNNCMIQLFITHFLGDIEIFILKAMAYDH YIAICKHLHYTIITTKQSCNTIIIACWTGGFIHSASQFLLTIFLPFCGLNEIDQYFCYVY PLLKLARIDIYRIGFLVIVNSGLISLLAFVILMVSYYLILSTIRVYSAESHTKALSTCSS HIIVVVLFFVPALFIYIRPAITFPEDKVFVLFCAIIAPMFSLLIYMLRKVEMKNAVRKMW CHQLLLARK Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 55,451,313 | 55,451,313 | SNP | A/G | rs11230661 (DbSNP) | |
11 | 55,451,045 | 55,451,045 | SNP | C/T | rs12789430 (DbSNP) | |
11 | 55,683,569 | 55,683,569 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
11 | 55,683,724 | 55,683,724 | SNP | C/A | 1000GP (CEU) | |
11 | 55,683,837 | 55,683,837 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
11 | 55,684,225 | 55,684,225 | SNP | G/T | 1000GP (CEU) | |
11 | 100 | -100 | SNP | A/G | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
11 | 55,359,025 | 55,470,359 | CopyNumber | Variation_0419 (DGV), Variation_34977 (DGV) |
11 | 55,446,295 | 55,618,623 | CopyNumber | Variation_2167 (DGV) |
11 | 55,339,702 | 55,638,112 | CopyNumber | Variation_2926 (DGV) |
11 | 55,222,420 | 55,621,884 | CopyNumber | Variation_3852 (DGV) |
11 | 55,382,681 | 55,548,038 | CopyNumber | Variation_4743 (DGV) |
11 | 55,367,167 | 55,452,993 | CopyNumber | Variation_6923 (DGV) |
11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
11 | 55,445,294 | 55,620,699 | CopyNumber | Variation_9187 (DGV) |
11 | 55,377,006 | 55,620,699 | CopyNumber | Variation_9188 (DGV) |
11 | 55,422,586 | 55,596,313 | CopyNumber | Variation_10360 (DGV) |
11 | 55,371,020 | 55,460,788 | CopyNumber | Variation_29910 (DGV) |
11 | 55,422,585 | 55,596,313 | CopyNumber | Variation_29911 (DGV) |
11 | 55,367,884 | 55,459,183 | CopyNumber | Variation_31823 (DGV) |
11 | 55,362,651 | 55,460,561 | CopyNumber | Variation_34978 (DGV) |
11 | 55,432,955 | 55,495,323 | Inversion | Variation_37124 (DGV) |
11 | 55,374,032 | 55,453,009 | CopyNumber | Variation_38079 (DGV) |
11 | 55,445,869 | 55,457,755 | CopyNumber | Variation_41255 (DGV) |
11 | 55,335,878 | 55,453,486 | CopyNumber | Variation_48051 (DGV) |
11 | 55,381,588 | 55,474,194 | CopyNumber | Variation_48053 (DGV) |
11 | 55,437,126 | 55,483,713 | CopyNumber | Variation_48054 (DGV) |
11 | 55,422,490 | 55,475,200 | CopyNumber | Variation_48055 (DGV) |
11 | 55,360,213 | 55,470,003 | CopyNumber | Variation_48828 (DGV) |
11 | 55,371,021 | 55,460,095 | CopyNumber | Variation_48836 (DGV) |
11 | 55,437,126 | 55,596,313 | CopyNumber | Variation_48840 (DGV) |
11 | 55,442,368 | 55,596,313 | CopyNumber | Variation_48841 (DGV) |
11 | 55,444,868 | 55,591,047 | CopyNumber | Variation_48842 (DGV) |
11 | 55,444,868 | 55,596,313 | CopyNumber | Variation_48843 (DGV) |
11 | 55,447,427 | 55,596,313 | CopyNumber | Variation_53429 (DGV) |
11 | 55,360,213 | 55,490,377 | CopyNumber | Variation_53507 (DGV) |
11 | 55,360,213 | 55,460,788 | CopyNumber | Variation_53994 (DGV) |
11 | 55,360,213 | 55,470,994 | CopyNumber | Variation_54018 (DGV) |
11 | 55,364,677 | 55,453,061 | CopyNumber | Variation_65955 (DGV) |
11 | 55,422,345 | 55,603,590 | CopyNumber | Variation_65956 (DGV) |
11 | 55,446,001 | 55,457,503 | CopyNumber | Variation_71330 (DGV) |
11 | 55,366,131 | 55,452,023 | CopyNumber | Variation_75644 (DGV) |
11 | 55,421,049 | 55,452,023 | CopyNumber | Variation_75645 (DGV) |
11 | 55,422,701 | 55,509,962 | CopyNumber | Variation_85778 (DGV) |
11 | 55,365,707 | 55,452,023 | CopyNumber | Variation_85779 (DGV) |
Deletion | 257 (Hasin) | |||
11 | 55,450,719 | 55,453,745 | Deletion | #11 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.