OR4P4 Olfactory Receptor
Gene Symbol | OR4P41 (View this gene in GeneCards) |
Family | 4 |
Subfamily | P |
Pseudogene | No |
CORP pseudogene probability score | 0.1 (functional) |
Aliases | HsOR11.11.18, ORL3311 |
External Ids | HGNC: 15180 GeneBank: AB065775, AF399448, NM_001004124 ORDB: ORL3311 |
Build #39 labels | OR4P4, OR4P3P |
Chromosomal location | 11:55,638,337-55,639,293 (+) |
Cluster | 11@56 |
Synteny | CLIC#26 |
Remarks |
Most Similar ORs in Humans (Paralogs)
Symbol | Percent | Length |
---|---|---|
OR4P1P | 73.7% | 308 |
Most Similar ORs in other species (Orthologs)
Specie | Symbol | Percent | Length |
---|---|---|---|
Dog | OR4P4C | 81% | 311 |
Mouse | Or4p4 | 87% | 307 |
Mouse | Or4p4b-ps | 84% | 309 |
Rat | Or4p4 | 86% | 307 |
Cow | OR4P7 | 75% | 301 |
Orang | OR4X2P | 55% | 293 |
Horse | OR4P7 | 79% | 300 |
Chimp | OR4P1P | 74% | 309 |
Sequence information
Nucleotide sequence |
ATGTTCTATCTACACTGGACCATGGAAAAAAGCAATAATAGCACTTTGTTTATTCTCTTG GGGTTTTCCCAAAATAAGAACATTGAAGTCCTCTGCTTTGTATTATTTTTGTTTTGCTAC ATTGCTATTTGGATGGGAAACTTACTCATAATGATTTCTATCACGTGCACCCAGCTCATT CACCAACCCATGTATTTCTTCCTCAATTACCTCTCACTCTCCGACCTTTGCTACACATCC ACAGTGACCCCCAAATTAATGGTTGACTTACTGGCAGAAAGAAAGACCATTTCCTATAAT AACTGTATGATACAACTCTTTACCACCCATTTTTTTGGAGGCATAGAGATCTTCATTCTC ACAGGGATGGCCTATGACCGCTATGTGGCCATTTGCAAGCCCCTGCACTACACCATTATT ATGAGCAGGCAAAAGTGTAACACAATCATCATAGTTTGTTGTACTGGGGGATTTATACAT TCTGCCAGTCAGTTTCTTCTCACCATCTTTGTACCATTTTGTGGCCCAAATGAGATAGAT CACTACTTCTGTGATGTGTATCCTTTGCTGAAATTGGCCTGTTCTAATATACACATGATA GGTCTCTTAGTCATTGCTAATTCAGGCTTAATTGCTTTGGTGACATTTGTTGTCTTGTTG TTGTCTTATGTTTTTATATTGTATACCATCAGAGCATACTCTGCAGAGAGACGCAGCAAA GCTCTTGCCACTTGTAGTTCTCATGTAATTGTTGTGGTCCTGTTTTTTGCACCTGCATTG TTCATTTACATTAGACCGGTCACAACATTCTCAGAAGATAAAGTGTTTGCCCTTTTTTAT ACCATCATTGCTCCCATGTTCAACCCTCTCATATACACGCTGAGAAACACAGAGATGAAG AACGCCATGAGGAAAGTGTGGTGTTGTCAAATACTCCTGAAAAGAAATCAACTTTTC |
Conceptual translation |
MFYLHWTMEKSNNSTLFILLGFSQNKNIEVLCFVLFLFCYIAIWMGNLLIMISITCTQLI HQPMYFFLNYLSLSDLCYTSTVTPKLMVDLLAERKTISYNNCMIQLFTTHFFGGIEIFIL TGMAYDRYVAICKPLHYTIIMSRQKCNTIIIVCCTGGFIHSASQFLLTIFVPFCGPNEID HYFCDVYPLLKLACSNIHMIGLLVIANSGLIALVTFVVLLLSYVFILYTIRAYSAERRSK ALATCSSHVIVVVLFFAPALFIYIRPVTTFSEDKVFALFYTIIAPMFNPLIYTLRNTEMK NAMRKVWCCQILLKRNQLF Protein domains and features |
Variations - SNPs
Chr | Start | End | Type | Variation | AA Change | SNP IDs |
---|---|---|---|---|---|---|
11 | 55,406,524 | 55,406,524 | NS | C/T | R/C | rs61896975 (DbSNP) |
11 | 55,406,686 | 55,406,686 | NS | G/T | D/Y | rs73469483 (DbSNP) |
11 | 55,406,562 | 55,406,562 | NS | G/T | M/I | rs57403436 (DbSNP) |
11 | 55,406,280 | 55,406,280 | SYN | A/G | G/G | rs55694932 (DbSNP) |
11 | 55,406,031 | 55,406,031 | SYN | C/G | L/L | rs60079577 (DbSNP) |
11 | 55,638,546 | 55,638,546 | nonsense SNP | C/G | Y/* | 1000GP (CEU, CHBJPT) |
11 | 55,639,048 | 55,639,048 | NS | C/T | R/C | 1000GP (CEU) |
11 | 100 | -100 | nonsense SNP | C/G | Y/* | 1000GP (YRI) |
11 | 100 | -100 | SYN | G/A | G/G | 1000GP (YRI, YRI) |
11 | 100 | -100 | NS | T/G | I/M | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
Chr | Start | End | Type | Sources |
---|---|---|---|---|
11 | 55,153,930 | 55,816,828 | CopyNumber | Variation_0308 (DGV) |
11 | 55,359,025 | 55,470,359 | CopyNumber | Variation_0419 (DGV), Variation_34977 (DGV) |
11 | 55,339,702 | 55,638,112 | CopyNumber | Variation_2926 (DGV) |
11 | 55,222,420 | 55,621,884 | CopyNumber | Variation_3852 (DGV) |
11 | 55,382,681 | 55,548,038 | CopyNumber | Variation_4743 (DGV) |
11 | 55,367,167 | 55,452,993 | CopyNumber | Variation_6923 (DGV) |
11 | 54,835,623 | 55,879,426 | CopyNumber | Variation_8690 (DGV) |
11 | 55,377,006 | 55,620,699 | CopyNumber | Variation_9188 (DGV) |
11 | 55,371,021 | 55,422,586 | CopyNumber | Variation_9662 (DGV), Variation_48831 (DGV) |
11 | 55,360,213 | 55,447,427 | CopyNumber | Variation_9663 (DGV), Variation_48827 (DGV) |
11 | 55,371,021 | 55,447,427 | CopyNumber | Variation_10359 (DGV), Variation_48834 (DGV), Variation_48835 (DGV) |
11 | 55,371,021 | 55,418,182 | CopyNumber | Variation_10361 (DGV), Variation_48830 (DGV), Variation_53101 (DGV) |
11 | 55,364,237 | 55,431,910 | Inversion | Variation_29474 (DGV) |
11 | 55,360,213 | 55,447,426 | CopyNumber | Variation_29606 (DGV) |
11 | 55,371,020 | 55,460,788 | CopyNumber | Variation_29910 (DGV) |
11 | 55,367,884 | 55,459,183 | CopyNumber | Variation_31823 (DGV) |
11 | 55,362,651 | 55,460,561 | CopyNumber | Variation_34978 (DGV) |
11 | 55,358,496 | 55,434,466 | CopyNumber | Variation_37484 (DGV) |
11 | 55,374,032 | 55,453,009 | CopyNumber | Variation_38079 (DGV) |
11 | 55,368,154 | 55,450,788 | CopyNumber | Variation_38972 (DGV) |
11 | 55,365,425 | 55,431,552 | CopyNumber | Variation_41253 (DGV) |
11 | 55,335,878 | 55,453,486 | CopyNumber | Variation_48051 (DGV) |
11 | 55,381,588 | 55,474,194 | CopyNumber | Variation_48053 (DGV) |
11 | 55,360,213 | 55,442,368 | CopyNumber | Variation_48826 (DGV) |
11 | 55,360,213 | 55,470,003 | CopyNumber | Variation_48828 (DGV) |
11 | 55,371,021 | 55,408,700 | CopyNumber | Variation_48829 (DGV) |
11 | 55,371,021 | 55,437,126 | CopyNumber | Variation_48832 (DGV) |
11 | 55,371,021 | 55,442,368 | CopyNumber | Variation_48833 (DGV) |
11 | 55,371,021 | 55,460,095 | CopyNumber | Variation_48836 (DGV) |
11 | 55,383,157 | 55,447,427 | CopyNumber | Variation_48837 (DGV), Variation_53573 (DGV) |
11 | 55,396,041 | 55,408,700 | CopyNumber | Variation_48838 (DGV) |
11 | 55,396,041 | 55,442,368 | CopyNumber | Variation_48839 (DGV) |
11 | 55,339,829 | 55,447,427 | CopyNumber | Variation_53140 (DGV) |
11 | 55,360,213 | 55,490,377 | CopyNumber | Variation_53507 (DGV) |
11 | 55,360,213 | 55,460,788 | CopyNumber | Variation_53994 (DGV) |
11 | 55,360,213 | 55,470,994 | CopyNumber | Variation_54018 (DGV) |
11 | 55,364,677 | 55,453,061 | CopyNumber | Variation_65955 (DGV) |
11 | 55,366,131 | 55,452,023 | CopyNumber | Variation_75644 (DGV) |
11 | 55,365,707 | 55,452,023 | CopyNumber | Variation_85779 (DGV) |
Deletion | 253 (Hasin) | |||
11 | 55,405,713 | 55,408,769 | Deletion | #15 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
Y63* | R231C | I243M | Y285D | R297K | % Freq | CORP | |
---|---|---|---|---|---|---|---|
1 | Y | R | I | Y | R | 75.50 | 0.676 |
2 | * | R | I | Y | R | 17.13 | 1.200 |
3 | Y | C | I | Y | R | 3.53 | 0.676 |
4 | Y | R | M | Y | R | 1.92 | 0.676 |
5 | Y | R | I | D | R | 1.69 | 0.676 |
6 | Y | R | I | Y | K | 0.23 | 0.676 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
Accession | Type | Chr | Start | End | Strand | |
---|---|---|---|---|---|---|
OR4P4.aApr07-unspliced | main_exon | CDS_partial | chr11 | 55,638,358 | 55,639,293 | + |
3UTR | chr11 | 55,639,293 | 55,639,296 | + |