OR4Q1P Olfactory Receptor
| Gene Symbol | OR4Q1P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | Q |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR15-8, HsOR15.1.6P, ORL3726 |
| External Ids | HGNC: 15376 GeneBank: AF546518-AF546531, BC062994, BK004628, NG_004162 ORDB: ORL3726 |
| Build #39 labels | OR4Q1P |
| Chromosomal location | 15:22,044,417-22,045,397 (+) |
| Cluster | 15@22 |
| Synteny | CLIC#32 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4Q3 | 93.59% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4Q3 | 85% | 304 |
| Dog | OR4Q3B | 83% | 304 |
| Mouse | Or4q3 | 79% | 319 |
| Rat | Or4q3-ps | 77% | 304 |
| Cow | OR4Q3 | 85% | 304 |
| Orang | OR4Q3P | 92% | 309 |
| Orang | OR4Q3BP | 91% | 308 |
| Orang | OR4Q3CP | 91% | 282 |
| Horse | OR4Q3 | 86% | 304 |
| Chimp | OR4Q2 | 58% | 304 |
Sequence information
| Nucleotide sequence |
TTTAATTCTTCTTTCTCTAGGTCACTTGATATTCTTGGCTTGATGAAAAAAAACAAGATT CTAACGTGACAGAACTTGTTCTTCTGGGCCTATCATCTTCTTGGGAGCTGCAGCTATTTC TCTTATTACTATTTTTGTTTTTTTACATTGCTATTGTCCTGGGAAACCTCTTGATAGTGG TAACAGTGCAAGCCCATGCTCATCTGCTCCAATCTCCTATGTATTATTTTTTAGGTCATC TCTCTTTCATTGACCTATGCCTAAGCTGTGTTACTCTGCCAAAGATGTTAGGGGATTTCC TACAGCAGGGCAAGAGCATCTCTTTTTCAGGATGCCTGGCCCAGATCTACTTCCTCCACT TTCTAGGAGCCAGTGAGATGTTTTTGCTGACAGTTATGGCCTATGACAGGTATGTTGCCA TCTGTAACCCTTTGCGCTACCTTATAAGTCATGAACCCCCAGCTATGCCTTTGGTTGGTT CTTGCCTGCTGGTGTGGGGGTTTTATCCACTCTATCATGCAGGTCATACTAGTCATCCAG CTGCCTTTCTGTGGCCCCAATGAACTGGACAACTTCTACTGTGATGTCCCACAGGTCATC AAGCTGGCCTGCATGGACACCTATGTGGTAGAGGTGCTGATGATAGCCAACAGTGGTCTG CTCTCTCTTGTCTGCTTCTTGGTCTTACTATTCTCTTATGCTGTCATCCTGATCACCCTG AGAACACACTTCGGCCAGGGCCAGAACAAGTTCCTCTCTACCTGTGCTTCTCACCTGACA GTGGTCAGCCTGATCTTCATGCCATGTATATTCATCTATTTGAGGCCTTTCTGCAGCTTC TCTGTGGATAAGATATTCTCCATGTTTTACACAGTGATGACACCTATGTTGAGCCCCCTC ATCTACACACTCAGAAATGCTGATATGAAGACAGCTATGAAGAAGCTGAGGATAAAACCA TGTGACATTCCATTTCCTTGT |
| Conceptual translation |
FNSSFSRSLDILGLXEKKQDSNVTELVLLGLSSSWELQLFLLLLFLFFYIAIVLGNLLI VVTVQAHAHLLQSPMYYFLGHLSFIDLCLSCVTLPKMLGDFLQQGKSISFSGCLAQIYFL HFLGASEMFLLTVMAYDRYVAICNPLRYLI\MNPQLCLWLVLACWCGGFIHSIMQVILV IQLPFCGPNELDNFYCDVPQVIKLACMDTYVVEVLMIANSGLLSLVCFLVLLFSYAVILI TLRTHFGQGQNKFLSTCASHLTVVSLIFMPCIFIYLRPFCSFSVDKIFSMFYTVMTPMLS PLIYTLRNADMKTAMKKLRIKPCDIPFPC Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 15 | 22,044,852 | 22,044,852 | SNP | G/A | 1000GP (CEU) | |
| 15 | 22,045,090 | 22,045,090 | SNP | G/A | 1000GP (CEU) | |
| 15 | 22,045,171 | 22,045,171 | SNP | T/G | 1000GP (CHBJPT) | |
| 15 | 22,332,751 | 22,332,751 | SNP | C/T | rs930109 (DbSNP) | |
| 15 | 22,332,803 | 22,332,803 | SNP | A/G | rs61663027 (DbSNP) | |
| 15 | 22,332,812 | 22,332,812 | SNP | T/C | rs2880331 (DbSNP) | |
| 15 | 22,332,832 | 22,332,832 | SNP | A/G | rs1429493 (DbSNP) | |
| 15 | 22,332,859 | 22,332,859 | SNP | G/T | rs62004745 (DbSNP) | |
| 15 | 22,333,176 | 22,333,176 | SNP | C/T | rs72700496 (DbSNP) | |
| 15 | 22,333,187 | 22,333,187 | SNP | C/T | rs1864288 (DbSNP) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 15 | 20,003,725 | 23,814,757 | CopyNumber | Variation_3951 (DGV) |
| 15 | 20,143,651 | 23,690,892 | CopyNumber | Variation_3070 (DGV) |
| 15 | 20,161,372 | 22,351,239 | CopyNumber | Variation_49466 (DGV) |
| 15 | 20,161,372 | 22,368,110 | CopyNumber | Variation_49467 (DGV) |
| 15 | 20,161,372 | 22,449,059 | CopyNumber | Variation_49468 (DGV), Variation_49469 (DGV) |
| 15 | 20,161,372 | 22,755,185 | CopyNumber | Variation_49470 (DGV) |
| 15 | 20,161,372 | 23,226,254 | CopyNumber | Variation_49471 (DGV) |
| 15 | 20,167,086 | 22,588,036 | CopyNumber | Variation_8779 (DGV) |
| 15 | 20,167,086 | 22,862,959 | CopyNumber | Variation_34576 (DGV) |
| 15 | 20,167,086 | 22,869,764 | CopyNumber | Variation_8781 (DGV) |
| 15 | 20,167,086 | 23,222,284 | CopyNumber | Variation_9251 (DGV), Variation_34504 (DGV) |
| 15 | 20,167,086 | 23,854,707 | CopyNumber | Variation_8784 (DGV) |
| 15 | 20,167,089 | 22,588,036 | CopyNumber | Variation_9250 (DGV) |
| 15 | 20,167,089 | 22,869,763 | CopyNumber | Variation_34665 (DGV) |
| 15 | 20,167,089 | 23,222,284 | CopyNumber | Variation_34608 (DGV) |
| 15 | 20,171,787 | 22,646,418 | CopyNumber | Variation_31980 (DGV) |
| 15 | 20,198,198 | 22,591,284 | CopyNumber | Variation_30670 (DGV) |
| 15 | 20,266,957 | 22,674,466 | CopyNumber | Variation_0318 (DGV) |
| 15 | 20,397,403 | 22,698,551 | CopyNumber | Variation_7046 (DGV) |
| 15 | 20,422,586 | 22,588,019 | CopyNumber | Variation_34663 (DGV) |
| 15 | 20,541,678 | 22,368,898 | CopyNumber | Variation_58702 (DGV) |
| 15 | 20,610,110 | 22,575,858 | Inversion | Variation_0443 (DGV) |
| 15 | 20,625,544 | 22,559,977 | Inversion | Variation_0444 (DGV) |
| 15 | 20,851,594 | 22,588,036 | CopyNumber | Variation_34545 (DGV) |
| 15 | 20,852,150 | 23,222,284 | CopyNumber | Variation_8785 (DGV) |
| 15 | 20,879,638 | 22,777,875 | CopyNumber | Variation_9254 (DGV) |
| 15 | 20,935,075 | 22,777,875 | CopyNumber | Variation_8783 (DGV) |
| 15 | 21,012,524 | 23,222,284 | CopyNumber | Variation_9256 (DGV) |
| 15 | 21,054,356 | 22,453,425 | CopyNumber | Variation_76814 (DGV), Variation_87462 (DGV) |
| 15 | 21,072,035 | 22,588,019 | CopyNumber | Variation_34607 (DGV) |
| 15 | 21,097,124 | 22,449,059 | CopyNumber | Variation_9742 (DGV) |
| 15 | 21,200,251 | 22,588,036 | CopyNumber | Variation_8786 (DGV) |
| 15 | 21,276,422 | 22,453,425 | CopyNumber | Variation_87468 (DGV) |
| 15 | 21,362,809 | 22,453,425 | CopyNumber | Variation_76815 (DGV) |
| 15 | 22,262,145 | 22,453,425 | CopyNumber | Variation_76813 (DGV) |
| 15 | 22,262,185 | 22,336,007 | CopyNumber | Variation_72150 (DGV) |
| 15 | 22,262,185 | 22,373,349 | CopyNumber | Variation_72167 (DGV) |
| 15 | 22,262,185 | 22,596,129 | CopyNumber | Variation_72162 (DGV) |
| 15 | 22,265,649 | 22,591,752 | CopyNumber | Variation_37535 (DGV), Variation_37626 (DGV) |
| 15 | 22,286,537 | 22,453,425 | CopyNumber | Variation_87461 (DGV) |
| 15 | 22,287,131 | 22,399,235 | CopyNumber | Variation_59598 (DGV) |
| 15 | 22,298,201 | 22,343,860 | CopyNumber | Variation_66725 (DGV) |
| 15 | 22,302,006 | 22,588,022 | CopyNumber | Variation_38952 (DGV) |
| 15 | 22,304,940 | 22,427,590 | CopyNumber | Variation_72152 (DGV) |
| 15 | 22,307,069 | 22,474,088 | CopyNumber | Variation_2182 (DGV) |
| 15 | 22,320,036 | 22,588,036 | CopyNumber | Variation_8782 (DGV), Variation_34557 (DGV) |
| 15 | 22,320,057 | 22,588,019 | CopyNumber | Variation_9249 (DGV), Variation_34643 (DGV) |
| 15 | 22,320,057 | 22,777,875 | CopyNumber | Variation_9252 (DGV) |
| 15 | 22,332,268 | 22,335,348 | CopyNumber | #168 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.