OR4R2P Olfactory Receptor
| Gene Symbol | OR4R2P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | R |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | ORL3573 |
| External Ids | HGNC: 15181 GeneBank: NG_004231 ORDB: ORL3573 |
| Build #39 labels | OR4R2P |
| Chromosomal location | 11:54,657,097-54,657,953 (+) |
| Cluster | 11@51 |
| Synteny | CLIC#26 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4R1P | 80.51% | 272 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4C58 | 56% | 214 |
| Mouse | Or4c58 | 56% | 206 |
| Rat | Or4c58 | 56% | 203 |
| Cow | OR4C21P | 57% | 215 |
| Orang | OR4C9P | 48% | 207 |
| Horse | OR4C2 | 54% | 207 |
| Chimp | OR4R1P | 87% | 203 |
Expression evidences
| Source | Accession |
|---|---|
| GNF Atlas2 | gnf1h05419_at |
| GNF Atlas2 | gnf1h05423_at |
| GNF Atlas2 | gnf1h05424_x_at |
Sequence information
| Nucleotide sequence |
GATGAAGAAGATAGATAATAGATAGACAACCATTTTATGAGAAATATCTAAACCAGTAAA TAAATTTTTCTAACACTTGCTGTAAGATATCAAATGCTAATCAGTACTCTGTGTCATATT TTGTAAATGAAATCATCATATAAGTTTATTGAGTTTTTTTGAGTACCTAATGACTTAATA AAAAAAATATGGGAGCATATGTAGTACCATGCTTGTATCAATACGGATAAAGTATCTGGA AGTCTTTGCTGAGAATCTTTTTGTGCTGCTGAGATTATTCCACTGATGTGGATGGTCCAT GGCTGTTATGTGACCGTCTGTACTACATGACCATCGTGAATCAATATAGGTGTAGCCATC TCACTGGAATGGCATGTACTGAAAGCTTTATCCAGGCACAGTTTAGATCCTCTCCCCAGT CTGACTTCCTTTCTATGACCCCAATGTCATAGCTCATTCATGTGTGACTTAAACACTTTT TTGAAACTCCTCTGCATGGGTACTACTAATACAATTGGTTTCTTTGTTGCTGCCAATGGT GGGTTCAACTACCTGTTAAACATCATTTTCTTGATGGTTTCTTAAGTGGCCATCCTATGT ACTTTGAAAACTCACAGCTTGGAGGAAAGATGCTAAAGTTCTCTACCTGCATCTCTCACA CCACCATGGTCATCTTATCTTTGAGTTCTGTATATCTGTGTATCTGTGCCCAGTGACCCT TCCCCAATCAATAAAGCAATGGCTGTGTTTCATACCGTGATAAATCCTATGTTAAAACCT TTAGTCTAACCCTCAGAAATGCAGAGGTGAAAAGTGCTTTGAGAAAGGTCTGGGTCAAAA GATGACCTGAAGAGAGA |
| Conceptual translation |
DEEDRXIDNHFMRNIXSKXFFXLLXIKCXVLCVIFCKXHHISLLSFFEYLMTXbr/>XKYGSICSTMLVSIRIKYLEVFAENLF/AAEIIPLMWMVHGCYVTVC/YMTIVNQYR CSHLTGMAWTESFI/GTVXLSPVXPFYDPNVIA/FMCDLNTFLKLLCMGTTNTIGF FVAANGGFNYLLNIIFLMVSXAILCTLKTHSL/GKMLKFSTCISHTTMVIL/FEFCI SVYLCPV/PSPINKAMAVFHTVINPMLKPLV/TLRNAEVKSALRKVWVKRXEER Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 100 | -100 | SNP | C/A | 1000GP (YRI, YRI, YRI) | |
| 11 | 51,461,356 | 51,461,356 | SNP | C/T | rs5006919 (DbSNP) | |
| 11 | 51,461,373 | 51,461,373 | SNP | C/T | rs10902352 (DbSNP) | |
| 11 | 51,461,499 | 51,461,499 | SNP | C/G | rs5006918 (DbSNP) | |
| 11 | 51,461,549 | 51,461,549 | SNP | C/T | rs5006917 (DbSNP) | |
| 11 | 51,461,579 | 51,461,579 | SNP | A/C | rs5006916 (DbSNP) | |
| 11 | 51,461,587 | 51,461,587 | SNP | G/T | rs5006915 (DbSNP) | |
| 11 | 51,461,614 | 51,461,614 | SNP | G/T | rs5006914 (DbSNP) | |
| 11 | 51,461,641 | 51,461,641 | SNP | A/G | rs5006913 (DbSNP) | |
| 11 | 51,461,646 | 51,461,646 | SNP | C/T | rs5006912 (DbSNP) | |
| 11 | 51,461,661 | 51,461,661 | SNP | A/G | rs5006911 (DbSNP) | |
| 11 | 51,461,842 | 51,461,842 | SNP | C/G | rs2201852 (DbSNP) | |
| 11 | 51,461,859 | 51,461,859 | SNP | C/T | rs11246577 (DbSNP) | |
| 11 | 51,462,018 | 51,462,017 | Ins(3) | -/ACA | rs3038042 (DbSNP) | |
| 11 | 51,462,027 | 51,462,026 | Ins(8) | -/TATCTGTG | rs72103269 (DbSNP) | |
| 11 | 51,462,029 | 51,462,028 | Ins(8) | -/TCTGTGTA | rs71856111 (DbSNP) | |
| 11 | 51,462,034 | 51,462,033 | Ins(8) | -/CACAGATA | rs71300931 (DbSNP) | |
| 11 | 51,462,035 | 51,462,034 | Ins(8) | -/TATCTGTG | rs72048343 (DbSNP) | |
| 11 | 54,657,437 | 54,657,437 | SNP | G/C | 1000GP (CEU) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 51,192,824 | 51,563,636 | CopyNumber | Variation_8689 (DGV) |
| 11 | 51,228,146 | 51,525,878 | CopyNumber | Variation_48823 (DGV) |
| 11 | 51,372,036 | 51,529,002 | CopyNumber | Variation_53111 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.