OR4T1P Olfactory Receptor
| Gene Symbol | OR4T1P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | T |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR14-26, HsOR14.1.21P, ORL3715 |
| External Ids | HGNC: 15360 GeneBank: BK004751, NG_004351 ORDB: ORL3715 |
| Build #39 labels | OR4T1P |
| Chromosomal location | 14:20,093,355-20,094,275 (+) |
| Cluster | 14@20b |
| Synteny | CLIC#32 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4K13 | 53.63% | 289 |
| OR4K3P | 51.22% | 287 |
| OR4L1 | 52.12% | 307 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4T2P | 62% | 307 |
| Mouse | Or4l15 | 53% | 294 |
| Rat | Or4l1 | 54% | 294 |
| Cow | OR4L16 | 68% | 315 |
| Orang | OR4T1BP | 88% | 274 |
| Horse | OR4L16P | 69% | 308 |
| Chimp | OR4K13 | 54% | 291 |
Sequence information
| Nucleotide sequence |
AAACAGCTCAATAATAATCTGAGTTTGTTTTGTTAGAATTCATCAGCACTTGGGAACTTG AAATTTTGTTTCTTAAATATTTTTGTTGGCCTATGCAGCAATCATGGCAGGAAACCTCAC TGCAATCGCTGTAACCTCCAATCCTCCCCTTTGCTCAACACCTATGTACTTCCTCCTTGG AAATCTCTCCTTTCTCAGTATGTTTATTTCCACAGTCACAATCTCTAAGATGGTCCAGAC GTTCTCAGGGAGAATAAAACCACTTCCTCATGGGGCTGTATGGCTCAGATCTCCACTTCT TAGGAGGCAGTGAGATGACTCTTCTCATATTTATGGCTGTTGATCAGCACATTGCAATAT GCAGACCTCTTCACTGCAGAACCATCACGAACTGCAGGGTACTCATGGCCACTCATGGGC TCTGTGCTGCTATCACGGGCTGTTGGTTTTGTGCATACTATAAGCCAGATTGTTTTTATT ATCACCTTGCCCTTCTGTGGCCCCAGTGTGGTGGACAATTTATTTTGAGACCTTCCTCTA GTTCTGAAGCTTGCCTGCACTGAGACTTATGATCTGGAGTTGCTGGTAATTGCTAAAAGT GGACAGTTGTCTTTCATCTGCTTCATAGTCTTGCTCATTTTCTACACTATTATTCTGGTA ACTGTGCAGCATCGATCCTCTGATGCACTCTCCAAGGCTCTGTCCACACTGTCTGCTCAT ATCACTGCAGTCACTCTATTTTTATGAGCCATGTGTCTACATTTACACTTGGCCATTTAG GAGCTTTTCAGTGGATACATTTCTTTCTGTGTTTTATTCAGTTACACCCTTACTGAACCC CATTACTTACAGTCTGAGATGAAAGCATCTATACATCAACTGAGGACCCAACACATCATC TCCAGACAAACCTTCTCTAAT |
| Conceptual translation |
MDIXKQLNN/SEFVLL/IHQHLGTXFVSXFLLAYAAIMAGNLTAIAVTSNPPLCS TPMYFLLGNLSFLSMFISTVTISKMV/DVLRENKTTSSWGCMAQI/HFLGGSEMTLLI FMAVDQHIAICRPLHCRTITNCRVLMATHGL\LLSRAVGFVHTISQIVFIITLPFCGPS VVDNLFXLPLVLKLACTETYDLELLVIAKSGQLSFICFIVLLIFYTIILVTVQHRSSDA LSKALSTLSAHITAVTLF\EPCVYIYTWPFRSFSVDTFLSVFYSVTPLLNPITYSLRX HLYINX/QHIISRQTFSN Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 14 | 20,562,401 | 20,562,401 | SNP | C/G | rs969775 (DbSNP) | |
| 14 | 20,561,922 | 20,561,922 | SNP | C/G | rs4144239 (DbSNP) | |
| 14 | 20,561,953 | 20,561,953 | SNP | C/T | rs74037232 (DbSNP) | |
| 14 | 20,562,080 | 20,562,080 | SNP | C/T | rs969774 (DbSNP) | |
| 14 | 20,561,847 | 20,561,847 | SNP | C/T | rs9323500 (DbSNP) | |
| 14 | 20,561,971 | 20,561,971 | SNP | C/T | rs4144238 (DbSNP) | |
| 14 | 20,561,753 | 20,561,753 | SNP | C/T | rs4144240 (DbSNP) | |
| 14 | 20,093,594 | 20,093,594 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 14 | 20,093,763 | 20,093,763 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 14 | 20,093,812 | 20,093,812 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 14 | 20,093,921 | 20,093,921 | SNP | T/C | 1000GP (CEU, CHBJPT) | |
| 14 | 20,094,242 | 20,094,242 | SNP | C/G | 1000GP (CEU, CHBJPT) | |
| 14 | 100 | -100 | SNP | C/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 14 | 20,203,125 | 20,626,160 | CopyNumber | Variation_8763 (DGV) |
| 14 | 20,203,125 | 20,716,841 | CopyNumber | Variation_8765 (DGV) |
| 14 | 20,203,125 | 20,655,466 | CopyNumber | Variation_34656 (DGV) |
| 14 | 20,540,298 | 20,587,047 | CopyNumber | Variation_35235 (DGV) |
| 14 | 20,521,060 | 20,562,080 | CopyNumber | Variation_49306 (DGV) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.