OR4U1P Olfactory Receptor
| Gene Symbol | OR4U1P1 (View this gene in GeneCards) |
| Family | 4 |
| Subfamily | U |
| Pseudogene | Yes |
| CORP pseudogene probability score | |
| Aliases | OR14-23, OR14-17, HsOR14.1.19P, ORL3711 |
| External Ids | HGNC: 15361 GeneBank: BK004623, BK004811, NG_004350 ORDB: ORL3711 |
| Build #39 labels | OR4U1P |
| Chromosomal location | 14:20,043,916-20,044,855 (+) |
| Cluster | 14@20b |
| Synteny | CLIC#32 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR4K14 | 54.1% | 305 |
| OR4K2 | 50.65% | 308 |
| OR4K3P | 51.6% | 312 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR4L1 | 52% | 309 |
| Mouse | Or4l15 | 51% | 313 |
| Rat | Or4l1 | 51% | 311 |
| Cow | OR4K57 | 64% | 312 |
| Orang | OR4K3BP | 51% | 312 |
| Horse | OR4K65 | 69% | 312 |
| Chimp | OR4K3 | 52% | 312 |
Sequence information
| Nucleotide sequence |
ATGGAAAAACAAAATCAGTCCATGGTGCCTGAATTTATTTTGTTGGGATTCAAAAATCTC ATGAGCTACAGATTTTCTTTATCTTATTTTTCCATTCTCTACATATCCATAATTAAGTAA CCTAATCATTATCTTTGTAGTGAAACTGGATCCTCAATTGCATTCTCCCATGTACTTCCT ACTGGCCAACCTGTCATCTACTGATATGCCCCTGGCCTCCTTTGCTACTCCTAAGAAAAT CGATAATGTAATTAGTGAATATAGGACCATCTCCTATGAAGGCTGCATGACATAGAGATT TTTCCTTCACTTTTTAAGTGGAAGTGAGATGGTTTTACTCTTAGCCATGGCAATCGATAG ATAATTTGCCATATGCAAACCCCTCCATTACAAGTCCATTGCATCGGACTTGCTCCTCGC TCCTGGACTATGGATTTCATGCACACCATGAGCCAAATTGTTCTCACAGTGACTTTGCCA TTCTGTGGTCTCAGTGTTGTGGATATTTTTGTGTGTGTGTGATCTGCCTTGTGATAAAAC TTGCCTGTACAGACACTTACATCTTGGAGCTATGAGTCATTGCAGACAGTGGACTACTTT CTTTGCTGTGTTTCATGTTTCTGTTAATCTCCTATAGCACCGTCCTGATTATTATTTGAC ATCATTCCTCCAGGGGGTCTTCCAAAACTCTGTCCACGCTTTCAGCCCACATTATGGTGG TGGTACTGTTCTTTGGAGCTTGCATCTTTACCTGTGAAAGACCATTCAGCACTGTCTCCA TTGATGTCTGTGTTTTAAACTATTTTTGCTCCCCTTTTAAATCCAATCATCTACACATTC AGGAATAACGACATGAAGAAAGCATTAAGAAAAATGAAGATTAACTTTGTGAGTTCTAGA TCAACTTGATAACTAAAATATTATAATCACTAAAAGCATC |
| Conceptual translation |
MEKQNQSMVPEFILLGFKN/HELQIFFILFF/FSTYPXSNLIIIFVVKLDPQLHSPM YFLLANLSSTDMPLASFATPKKIDNVISEYRTISYEGCMTXFFLHFLSGSEMVLLLAMA IDRXAICKPLHYKS/CIGLAPRSWTMDFMHTMSQIVLTVTLPFCGLSVVDIFVCVXA L/IKLACTDTYILELXIADSGLLSLLCFMFLLISYSTVLIIIXHSSRGSSKTLSTLS AHIMVVVLFFGACIFTCERPFSTVSIDVC\XIFAPLLNPIIYTFRNNDMKKALRKMKI NFVSSRST\NXIIITKSI Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 14 | 20,512,993 | 20,512,992 | Ins(1) | -/A | rs35171604 (DbSNP) | |
| 14 | 20,512,973 | 20,512,973 | SNP | A/G | rs60287575 (DbSNP) | |
| 14 | 20,512,610 | 20,512,610 | SNP | C/A | rs2792173 (DbSNP) | |
| 14 | 20,512,898 | 20,512,898 | SNP | C/T | rs12431763 (DbSNP) | |
| 14 | 20,512,825 | 20,512,825 | SNP | C/T | rs2775221 (DbSNP) | |
| 14 | 20,512,771 | 20,512,771 | SNP | C/T | rs9972276 (DbSNP) | |
| 14 | 20,512,828 | 20,512,828 | SNP | G/A | rs2792172 (DbSNP) | |
| 14 | 20,512,772 | 20,512,772 | SNP | G/T | rs2775220 (DbSNP) | |
| 14 | 20,512,775 | 20,512,775 | SNP | G/T | rs9972140 (DbSNP) | |
| 14 | 20,044,451 | 20,044,451 | SNP | A/C | 1000GP (CEU, CHBJPT) | |
| 14 | 20,044,613 | 20,044,613 | SNP | G/T | 1000GP (CEU, CHBJPT) | |
| 14 | 20,044,666 | 20,044,666 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 14 | 20,044,669 | 20,044,669 | SNP | G/A | 1000GP (CEU, CHBJPT) | |
| 14 | 20,044,739 | 20,044,739 | SNP | C/T | 1000GP (CEU, CHBJPT) | |
| 14 | 20,044,814 | 20,044,814 | SNP | G/A | 1000GP (CHBJPT) | |
| 14 | 100 | -100 | SNP | G/T | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 14 | 20,203,125 | 20,539,108 | CopyNumber | Variation_3036 (DGV) |
| 14 | 19,662,531 | 20,556,187 | CopyNumber | Variation_3929 (DGV) |
| 14 | 20,362,952 | 20,525,999 | CopyNumber | Variation_4827 (DGV) |
| 14 | 20,203,125 | 20,626,160 | CopyNumber | Variation_8763 (DGV) |
| 14 | 20,203,125 | 20,716,841 | CopyNumber | Variation_8765 (DGV) |
| 14 | 20,203,125 | 20,525,833 | CopyNumber | Variation_34547 (DGV) |
| 14 | 20,203,125 | 20,655,466 | CopyNumber | Variation_34656 (DGV) |
| 14 | 20,203,125 | 20,550,348 | CopyNumber | Variation_34660 (DGV) |
| CopyNumber | 227 (Hasin) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.