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(e.g. OR1G1, AF087928, Segregating Pseudo)

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OR4V1P Olfactory Receptor

Gene Symbol OR4V1P1 (View this gene in GeneCards)
Family 4
Subfamily V
Pseudogene Yes
CORP pseudogene probability score
Aliases OR11-131, OR11-133, ORL3483
External Ids HGNC: 14736   GeneBank: BK004690, BK004704, NG_002270   ORDB: ORL3483   
Build #39 labels OR4V1P
Chromosomal location 11:55,673,592-55,674,555 (+)
Cluster 11@56
Synteny CLIC#26
Remarks

Most Similar ORs in Humans (Paralogs)

Symbol Percent Length
OR4C3 47.33% 300
OR4P4 53.42% 307
OR4S2 50.49% 309

Most Similar ORs in other species (Orthologs)

Specie Symbol Percent Length
Dog OR4P10 66% 302
Mouse Or4p22 65% 310
Rat Or4p22c 62% 311
Cow OR4P36P 56% 308
Orang OR4H12P 46% 311
Horse OR4P76P 65% 310
Chimp OR4P4 53% 307

Sequence information

Nucleotide sequence ATTCATTTTTCCCTAGATACTTTATTTTTGCATAGCACACAACATATGGAAAGTCAAAGG
AACATATAAAAATTCATACTCATGAGCCTTTCCTCTATCCAGAACATACAAATATTTGTT
TTTGTGTTCTTATTTTGTAATGTTGCCATCTTGGTGGGAAACTTTCTGATCCTTATCTCT
ATTTGATGTAGTCCTCTTTTTAACCAACCAATGCACTATTTCTTCAGGCTATATGAATAT
CTACTATACCTCCTGTGTCACACCCAAAATAATTGGTGATCTAGTAGTGGGAAGAATAAA
CATCTCCTATGATAGGAGTCTTTCCCATGCACTTCTTTGGAATCATTGAAATCTTCATCC
TTACAGTCATGGCTTTTGATCACTATGTTGCCATCTGCAAACCTCCCCGCTACCTAATTA
TCATGAATAGGACAAAATACAATACTCTAATCTCGGTTGCTTGGCTGTTGGGGCTTTCCA
TTCTTTGTTTCAGTTTTCTATGAAAATCTGGTTGCCTTTCTGTGGCTCCAACAAAATTGA
TGACTAATATTAAGATATTTTTCCTTTACTGAAAGTCGCTTGTACTGATACCTGCATCAC
TGGTGTCCTCGTGGTTGCCAATTCTGGAATGTTTGCCTTGGTAACCTTGTTCTGTCGTTT
GGCTCTTATGTCATTATACTATTCCCCTTAAAAAATCATTCAGTAGAGGGAAGATGCAAA
GCCCTCTCTACCTGTGGATCTCATATCACCATGGTAATCTTTTTCTTCGAACCTTCAATC
TTTGCCTACCTTAGACCTTCTCACTTTTCCTGAGGACAAAATATCTGCTCTGTTTTACAC
TATTATTGCTCCAATGTTCAACCACCTAATCTATAACCTGAGAAATACAGAGATGAAAAA
GGCCATGAGAAAAGTTTGGTACCAAATATCATTTTCAGAAGAAAAACAGCTGATTTGTCC
TACT
Conceptual translation IHFSLDTLFLHSTQHMESQRNIXFILMSLSS/P/TYKYLF/VFLFCNVAILVGNFL
ILISIXSPLFNQPMHYFFRLY\IYYTSCVTPKIIGDLVVGRINISYDRSLS\HFFGI
IEIFILTVMAFDHYVAICKPPRYLIIMNRTKYNTLISVAWLLGL/HSLFQFSMKIWLPF
CGSNKIDDXXIFPLLKVACTDTCITGVLVVANSGM/CLGNLVLSFGSYVIILFPLKN
HSVEGRCKALSTCGSHITMVIFFFEPSIFAYLRP//TFPEDKISALFYTIIAPMFNHL
IYNLRNTEMKKAMRKVWYQISFSEEKQLICPT

Protein domains and features

Variations - SNPs

Chr Start End Type Variation AA Change SNP IDs
11 55,441,969 55,441,969 SNP A/G rs57303593 (DbSNP)
11 55,441,603 55,441,603 SNP A/G rs295630 (DbSNP)
11 55,441,070 55,441,070 SNP A/T rs57197484 (DbSNP)
11 55,441,256 55,441,256 SNP C/T rs73471428 (DbSNP)
11 55,441,470 55,441,470 SNP C/T rs57625794 (DbSNP)
11 55,441,896 55,441,896 SNP G/T rs11601087 (DbSNP)
11 55,674,420 55,674,420 SNP T/G 1000GP (CEU, CHBJPT)
11 100 -100 SNP T/C 1000GP (YRI, YRI, YRI, YRI)

Variations - CNVs

Chr Start End Type Sources
11 55,153,930 55,816,828 CopyNumber Variation_0308 (DGV)
11 55,359,025 55,470,359 CopyNumber Variation_0419 (DGV), Variation_34977 (DGV)
11 55,339,702 55,638,112 CopyNumber Variation_2926 (DGV)
11 55,222,420 55,621,884 CopyNumber Variation_3852 (DGV)
11 55,382,681 55,548,038 CopyNumber Variation_4743 (DGV)
11 55,367,167 55,452,993 CopyNumber Variation_6923 (DGV)
11 54,835,623 55,879,426 CopyNumber Variation_8690 (DGV)
11 55,377,006 55,620,699 CopyNumber Variation_9188 (DGV)
11 55,360,213 55,447,427 CopyNumber Variation_9663 (DGV), Variation_48827 (DGV)
11 55,371,021 55,447,427 CopyNumber Variation_10359 (DGV), Variation_48834 (DGV), Variation_48835 (DGV)
11 55,422,586 55,596,313 CopyNumber Variation_10360 (DGV)
11 55,360,213 55,447,426 CopyNumber Variation_29606 (DGV)
11 55,371,020 55,460,788 CopyNumber Variation_29910 (DGV)
11 55,422,585 55,596,313 CopyNumber Variation_29911 (DGV)
11 55,367,884 55,459,183 CopyNumber Variation_31823 (DGV)
11 55,362,651 55,460,561 CopyNumber Variation_34978 (DGV)
11 55,432,955 55,495,323 Inversion Variation_37124 (DGV)
11 55,374,032 55,453,009 CopyNumber Variation_38079 (DGV)
11 55,368,154 55,450,788 CopyNumber Variation_38972 (DGV)
11 55,434,499 55,444,020 CopyNumber Variation_41254 (DGV)
11 55,335,878 55,453,486 CopyNumber Variation_48051 (DGV)
11 55,381,588 55,474,194 CopyNumber Variation_48053 (DGV)
11 55,437,126 55,483,713 CopyNumber Variation_48054 (DGV)
11 55,422,490 55,475,200 CopyNumber Variation_48055 (DGV)
11 55,360,213 55,442,368 CopyNumber Variation_48826 (DGV)
11 55,360,213 55,470,003 CopyNumber Variation_48828 (DGV)
11 55,371,021 55,442,368 CopyNumber Variation_48833 (DGV)
11 55,371,021 55,460,095 CopyNumber Variation_48836 (DGV)
11 55,383,157 55,447,427 CopyNumber Variation_48837 (DGV), Variation_53573 (DGV)
11 55,396,041 55,442,368 CopyNumber Variation_48839 (DGV)
11 55,437,126 55,596,313 CopyNumber Variation_48840 (DGV)
11 55,339,829 55,447,427 CopyNumber Variation_53140 (DGV)
11 55,408,664 55,447,427 CopyNumber Variation_53178 (DGV)
11 55,360,213 55,490,377 CopyNumber Variation_53507 (DGV)
11 55,360,213 55,460,788 CopyNumber Variation_53994 (DGV)
11 55,360,213 55,470,994 CopyNumber Variation_54018 (DGV)
11 55,364,677 55,453,061 CopyNumber Variation_65955 (DGV)
11 55,422,345 55,603,590 CopyNumber Variation_65956 (DGV)
11 55,366,131 55,452,023 CopyNumber Variation_75644 (DGV)
11 55,421,049 55,452,023 CopyNumber Variation_75645 (DGV)
11 55,422,701 55,509,962 CopyNumber Variation_85778 (DGV)
11 55,365,707 55,452,023 CopyNumber Variation_85779 (DGV)
Deletion 256 (Hasin)
11 55,440,968 55,444,031 Deletion #16 (Waszak)

Haplotypes

Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.

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