OR51I1 Olfactory Receptor
| Gene Symbol | OR51I11 (View this gene in GeneCards) |
| Family | 51 |
| Subfamily | I |
| Pseudogene | No |
| CORP pseudogene probability score | 0.09 (functional) |
| Aliases | OR11-39, HsOR11.3.65, ORL3407 |
| External Ids | HGNC: 15200 GeneBank: BK004429, NM_001005288 ORDB: ORL3407 |
| Build #39 labels | OR51I1 |
| Chromosomal location | 11:5,440,573-5,441,514 (-) |
| Cluster | 11@5 |
| Synteny | CLIC#23 |
| Remarks |
Most Similar ORs in Humans (Paralogs)
| Symbol | Percent | Length |
|---|---|---|
| OR51I2 | 61.67% | 300 |
Most Similar ORs in other species (Orthologs)
| Specie | Symbol | Percent | Length |
|---|---|---|---|
| Dog | OR51A10 | 60% | 311 |
| Mouse | Or51i1 | 88% | 313 |
| Rat | Or51i1 | 88% | 313 |
| Cow | OR51I2 | 60% | 302 |
| Orang | OR51A10P | 59% | 296 |
| Horse | OR51I2 | 60% | 302 |
| Chimp | OR51I2 | 61% | 301 |
Expression evidences
| Source | Accession |
|---|---|
| mRNA | BC151148 |
| GNF Atlas2 | gnf1h10681_at |
Sequence information
| Nucleotide sequence |
ATGCTGGGTCTCAATGGCACCCCCTTCCAGCCAGCAACACTCCAGCTGACAGGCATTCCT GGGATACAAACAGGCCTCACCTGGGTTGCCCTGATTTTCTGCATCCTCTACATGATCTCC ATTGTAGGTAACCTCAGCATTCTCACTCTGGTGTTTTGGGAGCCTGCTCTGCATCAGCCC ATGTACTACTTCCTCTCTATGCTCGCTCTCAATGATCTGGGAGTGTCCTTTTCTACACTT CCCACTGTGATTTCTACTTTCTGCTTCAACTACAACCATGTTGCGTTTAATGCTTGCCTG GTCCAGATGTTCTTCATCCACACTTTCTCCTTCATGGAGTCAGGCATACTGCTGGCCATG AGCTTGGATCGCTTTGTGGCTATTTGTTATCCATTACGCTATGTCACTGTGCTCACTCAC AACCGTATATTGGCTATGGGTCTGGGCATCCTTACCAAGAGTTTCACCACTCTCTTCCCT TTCCCTTTTGTGGTGAAACGACTGCCCTTCTGCAAAGGCAATGTTTTGCATCACTCCTAC TGTCTCCATCCAGATCTCATGAAAGTAGCATGTGGAGACATCCATGTTAACAACATTTAT GGGCTCTTGGTGATCATTTTTACCTATGGTATGGACTCAACTTTCATCCTGCTTTCCTAC GCATTGATCCTGAGAGCCATGCTGGTCATCATATCCCAGGAACAGCGGCTCAAGGCACTC AACACCTGCATGTCACACATCTGTGCAGTGCTGGCCTTTTATGTGCCCATAATTGCTGTC TCCATGATTCACCGCTTCTGGAAAAGTGCTCCACCTGTTGTTCATGTCATGATGTCCAAT GTCTACCTGTTTGTACCACCCATGCTCAACCCTATCATCTACAGTGTGAAAACCAAGGAG ATCCGCAAAGGGATTCTCAAGTTCTTCCATAAATCCCAGGCC |
| Conceptual translation |
MLGLNGTPFQPATLQLTGIPGIQTGLTWVALIFCILYMISIVGNLSILTLVFWEPALHQP MYYFLSMLALNDLGVSFSTLPTVISTFCFNYNHVAFNACLVQMFFIHTFSFMESGILLAM SLDRFVAICYPLRYVTVLTHNRILAMGLGILTKSFTTLFPFPFVVKRLPFCKGNVLHHSY CLHPDLMKVACGDIHVNNIYGLLVIIFTYGMDSTFILLSYALILRAMLVIISQEQRLKAL NTCMSHICAVLAFYVPIIAVSMIHRFWKSAPPVVHVMMSNVYLFVPPMLNPIIYSVKTKE IRKGILKFFHKSQA Protein domains and features |
Variations - SNPs
| Chr | Start | End | Type | Variation | AA Change | SNP IDs |
|---|---|---|---|---|---|---|
| 11 | 5,462,702 | 5,462,702 | nonsense SNP | A/G | */Q | rs16930998 (DbSNP) |
| 11 | 5,461,991 | 5,461,991 | NS | A/C | S/A | rs1498486 (DbSNP) |
| 11 | 5,461,841 | 5,461,841 | NS | A/G | C/R | rs61736831 (DbSNP) |
| 11 | 5,461,860 | 5,461,860 | NS | C/A | R/S | rs61735506 (DbSNP) |
| 11 | 5,462,255 | 5,462,255 | NS | C/G | V/L | rs11037445 (DbSNP) |
| 11 | 5,462,105 | 5,462,105 | NS | C/T | A/T | rs60832895 (DbSNP) |
| 11 | 5,462,374 | 5,462,374 | NS | C/T | R/H | rs16930982 (DbSNP) |
| 11 | 5,461,974 | 5,461,974 | NS | C/T | M/I | rs11037443 (DbSNP) |
| 11 | 5,461,963 | 5,461,963 | NS | G/A | S/F | rs61737027 (DbSNP) |
| 11 | 5,462,085 | 5,462,085 | SYN | A/G | Y/Y | rs11037444 (DbSNP) |
| 11 | 5,441,472 | 5,441,472 | nonsense SNP | G/A | Q/* | 1000GP (CEU, CHBJPT) |
| 11 | 5,440,604 | 5,440,604 | NS | C/G | G/A | 1000GP (CEU, CHBJPT) |
| 11 | 5,441,144 | 5,441,144 | NS | C/T | R/H | 1000GP (CEU, CHBJPT) |
| 11 | 5,441,025 | 5,441,025 | NS | C/G | V/L | 1000GP (CEU, CHBJPT) |
| 11 | 5,440,761 | 5,440,761 | NS | C/A | A/S | 1000GP (CEU, CHBJPT) |
| 11 | 5,440,631 | 5,440,631 | NS | C/G | S/T | 1000GP (CEU) |
| 11 | 5,440,855 | 5,440,855 | SYN | G/A | Y/Y | 1000GP (CEU, CHBJPT) |
| 11 | 5,440,875 | 5,440,875 | NS | T/C | T/A | 1000GP (CHBJPT) |
| 11 | 100 | -100 | NS | C/G | G/A | 1000GP (YRI, YRI, YRI, YRI, YRI, YRI, YRI, YRI) |
| 11 | 100 | -100 | SYN | G/A | Y/Y | 1000GP (YRI, YRI, YRI) |
Variations - CNVs
| Chr | Start | End | Type | Sources |
|---|---|---|---|---|
| 11 | 5,416,622 | 5,492,033 | CopyNumber | Variation_2901 (DGV) |
| 11 | 5,431,984 | 5,493,309 | CopyNumber | Variation_9174 (DGV) |
| 11 | 5,459,803 | 5,462,844 | CopyNumber | #61 (Waszak) |
Haplotypes
Protein haplotypes were calculated using the 1000 genomes project as described in Olender T. et. al. BMC Genomics 2012.
| G304A | S295R | S295T | F284L | S261F | A252S | R236Q | A226D | T214A | C191R | V149L | R109H | D57E | Q15* | T7N | % Freq | CORP | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | G | S | S | F | S | A | R | A | T | C | V | R | D | Q | T | 33.26 | 0.357 |
| 2 | G | S | S | F | S | S | R | A | T | C | V | R | D | Q | T | 33.18 | 0.357 |
| 3 | G | S | S | F | S | A | R | A | T | C | L | R | D | Q | T | 9.75 | 0.357 |
| 4 | A | S | S | F | S | A | R | A | T | C | V | R | D | Q | T | 9.22 | 0.357 |
| 5 | G | S | S | F | S | A | R | A | A | C | L | H | D | * | T | 7.76 | 1.200 |
| 6 | G | S | S | F | S | A | R | A | T | C | L | R | D | Q | N | 1.69 | 0.357 |
| 7 | G | S | S | F | S | A | R | A | T | C | L | R | E | Q | T | 1.31 | 0.357 |
| 8 | G | S | S | F | S | A | R | A | T | C | L | H | D | * | T | 1.08 | 1.200 |
| 9 | G | S | S | F | F | A | R | A | T | C | V | R | D | Q | T | 0.84 | 0.357 |
| 10 | G | S | T | F | S | S | R | A | T | C | V | R | D | Q | T | 0.61 | 0.357 |
| 11 | G | R | S | F | S | S | R | A | T | C | V | R | D | Q | T | 0.38 | 0.357 |
| 12 | G | S | S | F | S | A | R | A | T | C | V | H | D | * | T | 0.23 | 1.200 |
| 13 | G | S | S | F | S | A | Q | A | T | C | L | R | D | Q | T | 0.15 | 0.357 |
| 14 | G | S | S | L | S | A | R | A | T | C | V | R | D | Q | T | 0.15 | 0.357 |
| 15 | A | S | S | F | S | S | R | A | T | C | V | R | D | Q | T | 0.08 | 0.357 |
| 16 | G | S | S | F | F | A | R | A | A | C | L | H | D | * | T | 0.08 | 1.200 |
| 17 | G | S | S | F | S | A | R | D | T | C | V | R | D | Q | T | 0.08 | 0.357 |
| 18 | G | S | S | F | S | S | R | A | T | C | L | R | D | Q | T | 0.08 | 0.357 |
| 19 | G | S | S | F | S | A | R | A | A | R | L | H | D | * | T | 0.08 | 1.200 |
AceView Gene Models
The information is based on AceView gene models, constructed from cDNA sequences. The information might be incomplete.
| Accession | Type | Chr | Start | End | Strand | |
|---|---|---|---|---|---|---|
| OR51I1.aApr07-unspliced | main_exon | 3UTR | chr11 | 5,440,570 | 5,440,573 | - |
| CDS | chr11 | 5,440,573 | 5,441,514 | - | ||